RNA id: XM_026923684.2


Basic Information

Item Value
RNA id XM_026923684.2
length 3719
RNA type mRNA
GC content 0.47
exon number 17
gene id cdk17
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19190496 ~ 19247363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taggcttttcctcttcctcccgTGTCGCTTCACTAGGCGGAGGCGTCAGTAGAGACGGGGAGCAACCCGAGCTGTGTCAGTATCCGCCGGAGTTCAAGCGAAAAccctttaaaaacacacactcggtCGGAGAGCTGTATCATAAACGGAGTCGTTTGGGTTTTGAGTTTATACCTCGAGTGCAGTTTTAAGCGCTGAGGCAGTAAAAGTCCCTAAAAACCGCGATAATCAACAATACCCGAGGAGCAGTGTGGAGAGAAAAGACGGCATCCGGCCTGCGAGAAAGAAGTAGCCGAGGGCTGGTCCTCTGGTCTAAGCGGCTCTTTTAGTTTCTGGCCTCAAGTGCCTCAGAGGCCCATGGAGAAGATGAAGCGGTTTAAGAGGCGTTTGTCGCTCACGCTGCGTGGCAGCCAGACCATCGATGAGTCCCTCTCGGAGCTCGCCGAGCAGATGACCATCGAGGAGAACAGCAGTAAGGACAGTGaGCCCATAGTGAGGAATGGACGGCCGCCCTCGTCTCATAGCATGCACTCGTTCTTGCACCAGTACACAGGCTCGTTTAAGAAGCCTCCTCTCCGCCGGCCTCACAGCGTCATCGGGGGCAGCTTGAGCTCCTTCATGGCCATGCCACGCAATGGCAGCAGACTCGATATAGTCCACGAGAACCTAAAGATGGGATCTGATGGTGAGAGTGATCAGGCATCAGGAACATCTTCAGACGAGGTTCAGTCACCCACTGGAGTGTGTCTCCGCACCAGGACACATCGCCGCATATCCATGGAGGACGTGAATAAGCGCCTGTCTCTACCTGCTGATATTCGGATTCCTGATGGTTATCTGGAGAAACTGCAGCTGAGCAGCCCCCCCTTCGACCAGCCACTCAGCCGCCGATCACGCAGGGCCTCACTGTCAGAAATTGGCTTTGGCAAACTGGAGACCTACATCAAACTGGACAAGCTTGGAGAGGGAACATATGCCACAGTTTTCAAAGGCCGGAGCAAACTGACGGACAACCTGGTAGCTTTGAAGGAGATCCGGTTAGAGCACGAGGAAGGGGCACCTTGCACAGCCATTAGAGAGGTTTCATTACTGAAGGACCTGAAGCACGCCAACATTGTTACGCTTCATGACATCGTCCACACAGAAAAATCCCTCACACTTGTCTTTGAGTACCTGGATAAGGATCTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGCATGCACAATGTTAAGATTTTCCTGTTTCAGATCTTGCGAGGACTGGCATACTGCCACAGACGTAAGGTTCTGCACAGGGACCTGAAGCCACAGAACCTCCTCATCAATGAGAGAGGGGAGCTCAAGCTGGCAGACTTTGGTCTGGCCCGGGCCAAATCTGTCCCCACTAAGACCTACTCAAACGAAGTTGTAACTCTGTGGTACAGACCTCCCGATGTGCTGCTCGGCTCTTCTGAATACTCCACGCAGATCGACATGTGGGGTGTTGGATGTATATTCTATGAGATGGCTGCTGGTCGGCCACTTTTCCCAGGCTCCACAGTGGAGGATGAACTGCATCTTATTTTCAGGCTATTGGGTACACCAACGGAGGACAACTGGCCAGGAATCTCATCTATCGAGGAATTCAAATCCTACAACTTTCCCAAATACAAACCACAGCCCTTCATCAACCATGCACCGAGGCTAGACACTGAAGGAATtgagttgttgttgtcatttctTAAGtACGAGTCCAAGAAACGAATTTCTGCTGATGATTCAATGAAACACTCTTACTTCAAGAGTCTGGGCATGCGCGTGCACACACTGCCTGAGAGTATCTCTATATTTACACTGAAAGAGGTGCAACTACAGCGAGACCCTGGCTACCGGAATGCCTCATACCCCGAgacagGAAACAGCAAGAACAGAAGACAGAGTATGCTGTTCTAAGCACTGGCTCTGACAAACACACTCgcacaagcatacacacacacgcgcatgcacacacacaagcacacacagtgGATCAGGATGATGGCGTTTGCTCAGCAACTGTCTTGTACAGACTAACAGACTAGCCTCCCTACCCTctttagtcagtgtgtgtgtgagggtgaaCGATGGGTGAGGGGGACTGACCAGTCCGGCTCTTTCCCATCCTCCTGTGTCCAGCATGCAGCCAGTCCCAGTGACAAAACACAGCGACGCCCCTGCCCCATGTCCGCTTCCTCAAGGCAACACATTGGAGTTTAGACTGTGAGATGGGAgcgtgtatatatgtgtgtatgtgtgtatttattgaaaAGGTcgttgggcttttttttttgctgctaatCAACTACTGTCTCCTTGTAACCTTCCCTACTCTCGGGCAGCCTTCCTGGTTGCGGACACATCAGTACTGCCGTcaaggatttctttttttttttaaaatagttattaTAATTCTGGAtataattatgttaataatgttCATATTGCAAATATCATGTTTGTTATTGGCCACATTTTGAATTgcatcctcttttttttttggcatggtTATTATGTAGAAATAATAGTTCCTACACACTTTGTAGAAGCTGTACAAAAACTCCTCACTCCCATTCCAATCTCCAAAGCTCACTTTGACATTTCAGATGACCCAGAGCCTGGAGAAGAGACCCTCCTCCTCTTTGTCAGTGAGAATGCAGCAAGTGTGTAGCTCGTTCAGGGAGACGAACTCACTGGTGTTCAGCCTGGTGAGAGAGCGCTAAACAGCTTTTTTTCGACTCATTTGTGACTGTCGCCACGTTCAGTCAGCATTGTGGAGCAAGCCGTGATGTCGGGGTGGAGGACCAAGCTGTGAGAGGGGGATCAAAACCACTGGACCAGCAGTAATCACGTGATCTTTGCAGAAATGACTGAAGACCTTCCACACCTTCCTCTTTGAGCAAATGTTCTCCTTTAGTGTCATTCTACTTATCCATTTCCTCAGTGAAAACTTTCTGCCTGGACTGAAGTgcttgtatgatttttttttccctttgagaGCAACTTATTCTAATGCATCATCAGTGATTGTACAAAAATGATTCATCCCAGATCTCTGtagcatttgtttatttgtgtgtgtgtcacagtgtaagagtgtaagagagtgagtgagtgagcgagcgaGCGTGTGTTTGTAAGAGATCATGGAGATCAGATTGTACAGAACCTTGTTGCACCATGCTAGTAAGTTTTCTGAAGATGCGTTAGTTTCATTAACAGTATTAAGACAATTTTTTCTAAGTTACATTTTGATTTGTCTGTGAATAATAGTATAACAGTGTGGCATGTTGGAGTCCAACTGTCTCACATTCATTCTTgaaatttctttatttagaaaaaaacgAGTGTGACAAATACAGGAACAAAAACTTGGCTACATCGGACCAACACTTTCCCCACCAATATTTGTACACATGAAGAAAAGATTCCAGACAGAGATTTTAGATTAAACAGACTATATTGTTTTTGAACTGACATCACTCTTGATTAATATTGTAATTTTGCAGTTGACTGTGATTGGAgaagcgtgtgtatgtgtgtagatgCATGGAACGCCTGGTGTCTTGTAAACCTCGCCTCTGTGGAACACTGACGCTCTCAGTTGAATGTCAGCTGAATTGACCATTTAACTCTTTCTACTGCAGATATTTATTTCTCTTGATCAGTGAAGTAAACATGGTCTGTTTCCTACGGaa

Function

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337468 lncRNA downstream 252401 18868057 ~ 18938095 (-) False G284885
TU337467 lncRNA downstream 252401 18934868 ~ 18938095 (-) True G284885
TU337489 lncRNA downstream 267599 18918456 ~ 18922897 (-) False LOC117599567
XR_004579967.1 lncRNA downstream 267626 18918396 ~ 18922870 (-) True LOC117599567
TU337464 lncRNA downstream 328344 18861845 ~ 18862152 (-) True G284882
TU337873 lncRNA upstream 41228 19288591 ~ 19290806 (-) True G285245
TU337891 lncRNA upstream 109197 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 109611 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 121964 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 157716 19405079 ~ 19405317 (-) True G285287
XM_026923199.2 mRNA downstream 29215 19140445 ~ 19161281 (-) True lta4h
XM_026922669.2 mRNA downstream 83070 19095392 ~ 19107426 (-) False tfec
XM_026922670.2 mRNA downstream 85145 19095397 ~ 19105351 (-) False tfec
XM_034313021.1 mRNA downstream 87419 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA downstream 87419 19095396 ~ 19103077 (-) True tfec
XM_034313075.1 mRNA upstream 5460 19252823 ~ 19254197 (-) True LOC117599463
XM_034313076.1 mRNA upstream 13350 19260713 ~ 19262044 (-) True LOC117599464
XM_034313291.1 mRNA upstream 24232 19271595 ~ 19272694 (-) True LOC117599574
XM_026922764.2 mRNA upstream 35787 19283150 ~ 19284499 (-) True LOC113531838
XM_026923849.2 mRNA upstream 67250 19314613 ~ 19335240 (-) False mcm10
trnae-cuc_38 other downstream 978103 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1002498 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1097952 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1099874 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1106642 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1065704 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1175038 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2213463 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2213463 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2213464 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile