RNA id: XM_026923692.2


Basic Information

Item Value
RNA id XM_026923692.2
length 3950
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC113532343
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12083126 ~ 12093099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATGAACGCTAGGGGGGAGATATAGGACTCCATAGGGAGAAAGGAGTGTGGAACAAGAAAGTATGAGGAAATGAGTGTACTGAGACCAGAGGGTTAAGTCTGGATTGAAAATTCGACGACTTCAAGGGATTCTTGAGCCATCCTGACTTCTACTGCACATTAAGATCCACCTGCAGCACAACAGATCTGATGGTCAAATGGAGCTTGAGGATATATGTGATGACGTAGCTCACCTAGATTTAAACGAGATAGAAAGTGAAACAGGTACATGTGTGGTGATTGATgaggaaaatgaaatgcaaGTTGTTAAAACCAAGATGAGATTATGTAGGATTAAAGACTGTGAAGGCTGCAGCAACCTTCACCTGTGCAAACTGTACCTGTTTGGAGAGTGCCCATACAACACCAAAAGAGAGGAATGCCAGTTCAGCCATGACCTCTATTCAGAGCACAACATCGGCGTGTTGTGCCAACACAAACTGCTGGAACTGGACTTCAGTGAGCTGTCCCTTACACTTCTGCAAAATGACACCACCTTATTGCCTTCAGTGTGTTTGGCATACAACGAGGGCAGTGGTGAGTTTGGGAACTGTCTTGAGGCGGAGACCTGTAAAAATCTCCATGTCTGTGAGAACTACATCAGAGGAATATGTGACGGCAGCACTGGATGCAACAGATGCCATGATTTATATGAACCTCATCCATTGAAAACACTGCAGGACAACGGAGTGCCCAATCAGCTGATGGACAATTTATTATCAGTCTATAAGAGCATGCTTACCATTGCACTTGCAGACAGACCCAGCATTGACTGCAGTGCCATAGCACCAGAGAAATGGTGGATATGTCTTTTCCACTTCCAAGATTCCTGCAATTTGGAAGACGCATGTGAAAATGTGCATTTCTGTTTGCCCTATAAATGGGAGCAGTGGGATGGGCACAGCTGGAAAGTTCTGCCTGATAACGAGGAAATAGAAAGAGCGTACTGTGATCCCACTAAGACACACAGTGACAGCAGTGTACCTGTACACTTTGACACAATGACTCAGGGTTCTGTAGAGGTCCGTCGTCTCTCCACTATTTCATCAGTTCTGGATCCCAGCTTTGCCCTCACTACAAAATGGATCTGGTACTGGGAGGATGAAAATGGGGACTGGATCCAGTATGGATCATCACAAGGGACACACAATACATGTTCCATCACCAGTGAGTTCCTGGAGTGTAAATACCAAGAAAACAGGAGTCCTATCATCAAATTCACTACAGATGAACACTCTTATGTGGTCAATGTGGAAGACATGATTCAGTACAACACACAAATTAGCACCGAAATGCGAGTAAGGAGGAGACCCATGTTTCTCTCAGCAGAAGATGTCCAAAACATCATAACAAGAGAAATGGAATTGAAGGATCATTTGCAAAATCCCCAAGCTTTGCCTTGTGACTCGGATAAGGCCAATATGTCTGTAACTGGATTCAAGaGGGTTCTCCTGGACAGCAATACCGATGAATATAAGAAGATCGCTGAGTGCTTTTATCAGACAATGTCAGAGTTTATGGTGAAGAGCATTGAGAAGGTGCTGAATGAGGACTTATGGGAAGTTTATCAAAGGCATGtcagtgtgatgaagcagaaaaatgtAGGCAAGGAGAATGAAACACTCCTGTTTCATGGCACTGAGTCCAAACACATTGATGCCATCTGCCAGCAGAACATGGACTGGAGAATTTGTGAAGCACATGAGACAGCATATGGTAAAGGTAGTTATTTCACCAGAGATGCCAAATCCTCCCACAGCTACACTGACCAGTCTGGAACGCAGTGTATGTTCCTTTGCCGGGTATTCATAGGAGAGTATACCAACGGGCATCCCAGCTATATCCACGCTCCTCTGAAAGATGTGGAAAATGGCATCTACTATGACAGCTGTGTAAACGATATCAACAACCCGTCCATATTTGTTGTGTTTGAGAAACGTCAGGTGTACCCCGAGTACCTAATTCAGTATGAACAAAGAACAGGGAACAGTCCGCAACATGTCTCTTTTAATCAGTTCTCTTCAAGCAGTCAGGCTAGTTTCAGTGATCCATGTGTATCCAGTCAATGTTCTCCCCACTATTTCTTGCCACATTTTACTCCTGTGGTGCATTCCCCCTACTTTGCTCACTCAAAGAAAAAATACTTCCAAGGGGGTGCACCCCGGTTACCATTTCCTCTCCATTATAAGCCTTCCTTAGTCAGAAATTTTAGAATTAGCAATCCTACAAGGCCACCAAAACGACAAAGTTCACATAGAGGATTTGGGTCAACGCATTTGCCAGAAAACATTTTAGCTCATGCCAGGACCTCAGCATCAGTTAGAAAGGACACTGCAAAACAACTGGTTTCAAACTCAGTCAGGTCAGCTAATGAGTCGCGTCCAATGCCTTTGCCTACAACATTATCGACTGTTACTAAGGAATCAAAATCAGTTAAAACTCAGGATGGCAGACAACAAACATCAAATCCAACCAGACCATCTGGTCGATTAAGTCCAGTGAATTCTTCAGCAAGTGTTTCGTCTGATACCAAAACCACAAAGTCAGTTAAAGCTCTGAATGGCAAACACCAGGGCTCAAATTCAACCAAATCAAATAGTGGATTAAGTCCAGGGACTACTTCCCTGTATGTATCAGTCAGGTTGAGCACATCAACTCATACTGATGCTTCAAAGTCAGTTACAATTGAAAATGCCAGCGGAAAAAGAGTTTCTAGTCTCAGTACGGAAAGCACTAAACCTGCAGGTAAGAGCTCCAGAAGTTCTGatacacaaagcaaaaaacCTGCAGGTAAAAGCTCCAAGAGCTCTTATACACAAAGTACTACATCTGCAGGTAAAAGCTCCAGAAGCTCTGATACACAAAGTACAAAACCTGCAGGTAAAAGCTCCAAGAGCTCTTATACACAAAGTACTACATCTGCAGGTAAAAGCTCCAGAAGCTCTGATACACAAAGTACAAAACCTGCAGGTAAAAGCTCCAAGAGCTCTGCTTCACAAAGCACTACATCTGCAGGTAAAAGCTCTAAGAGCTCTGCTTCACAAAGCACTACATCTGCAGGTAAAAGCTCTAAGAGCTCTGCTTCACAAAGCACTAAACCTGCAGGAAAAAGCTTCAGAAGCTCTACAGGAAGGCATTAGTGCTTGTTAGTGTAGAAGCCTTCAACTATCTTAAAATGGTAGCTGTATTTCAGGGTATTCGTATGATACAGCCATTGCATTATTGaatgataaaatgaaatgtaagcAAAACTGATCTTTGAGGTAAATCTTTCATCACATTTCTATTCCTCATTGTAATCATTTGCTTTGTTGGAAGAAAGTGACTGATTTGCTGTTCAGCTGTGCAACaagcttttctttcttctagTTTGTACAGTATTCCCAACTGGCCCTCGTGGAGAATTTGATCTGGAAACAAATAACATTGTGATTAGTATTGGGTTATATCAATAAATGAGGCAAACAGCTAATTgtattctataataataataataataataataataataatagttttataaactattaaaaCCTTTCCACAGTCAAAATACGCAAAGATGTGGTGAAGAAGGCATGTTGTTGGGACccatttccatttccttttCCCATTCCATAAAGAACACctaagcaaaatatttttattatggcATATTGTAGACATTTAGGCAGTCAAATAATTTTCAGATTAAGGAAAACCACTTGAAATCAGCTCAATCTGATGAGATATGCATACGAACCTACATGGGCAATCGGGTTGGATTTTGAATTCATACTGTATGAATgaagtcataaaaaaaacagaaacctgATGCTAAtcctaacattaacatttctaaCCTTTCATACAAAgctgtgtaaattgttacatCTCATGTATGTGTGATATTATTAAACACCTTAAGGATTTT

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation
ko00380 Tryptophan metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333441 lncRNA downstream 46764 12033096 ~ 12036362 (-) True G281362
TU333155 lncRNA downstream 330234 11739730 ~ 11752892 (-) False dusp16
TU333143 lncRNA downstream 372142 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 493439 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 499489 11583393 ~ 11583637 (-) True G281070
TU333459 lncRNA upstream 758 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 158215 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 275860 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 364464 12457563 ~ 12459092 (-) True G281510
TU333645 lncRNA upstream 383165 12476264 ~ 12477629 (-) True G281527
XM_026922786.2 mRNA downstream 1355 11989144 ~ 12081771 (-) True syn3
XM_026923422.2 mRNA downstream 157619 11865792 ~ 11925507 (-) False ptpro
XM_026923424.2 mRNA downstream 157620 11865792 ~ 11925506 (-) False ptpro
XM_026923423.2 mRNA downstream 157620 11865792 ~ 11925506 (-) False ptpro
XM_026923421.2 mRNA downstream 157620 11865792 ~ 11925506 (-) True ptpro
XM_026923739.2 mRNA upstream 4422 12097521 ~ 12108662 (-) False LOC113532368
XM_026923738.2 mRNA upstream 4422 12097521 ~ 12108662 (-) True LOC113532368
XM_034313357.1 mRNA upstream 17144 12110243 ~ 12122771 (-) True LOC113532307
XM_026922648.2 mRNA upstream 161156 12254255 ~ 12272627 (-) True zgc:165507
XM_034313233.1 mRNA upstream 270709 12363808 ~ 12367546 (-) True LOC113532409
TU333129 other downstream 422799 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 495102 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 823734 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1075983 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1787005 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 487824 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3081249 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4865425 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5010466 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5885686 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile