RNA id: XM_034313358.1


Basic Information

Item Value
RNA id XM_034313358.1
length 1785
RNA type mRNA
GC content 0.51
exon number 7
gene id cbll1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19516354 ~ 19519608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTcacattttgcatgtttttctttagcAATAGAGAACTTTTATCAGCTTTACATTAACAAAACTGGACTTACGCGTGGCACCTGGGATTATTTTAGGAGATAATTTATCATGTTCACgCTAATTCTCCAGATAGTTCATGAGTGCACTCTAGCTTCAGCAGaCAGTGACATGCAGGGAACAGAGGGGGCATTAGGAGGTCCTGATGTCAGAAGGAGGATTCCCATCAAGCTTCTTCCTAAACAGGCTAGAAAAAGCTTTGCCTACAAGCAGGAGGAGAGGTTTGACTGTGGGGTAAAGGCCGGAGATGCTTATGCTAGCCAGCGGCGATACCCCCAGCCTTTGTTTTGGGATTATAAGCTTAATCTGATTGGTGAAAAAGATGAAACTCCCATCCATTTTTGTGACAAGTGTGGGCTCCCCATTAAGACTTACGGACGCATGattCCATGTAAACATGTTTTCTGCTATGAATGTGCCGTACTTCATGAAAGGAAAGGTGATAAAATGTGCCCAGGTTTGACGCTGTACAGCTGTACAGACCCAGTCCAGCGGATTGAGCAGTGCCAGCGCGGCTCTCTCTTCATGTGCAGCATCGTTCAGGGCTGTAAACGCACCTACCTCTCGCAGAGAGACCTGCAGGCCCACATCAACCACCGCCACATGAGGGCGAGCAAGACTTCAGCAGGCCGCTCTGATCCTCACCACCTTCCCGGCTCTGAAGTTTCAGAGCGTTTCCGCGTGCCCCCTACTCACATGCCCAAATCCCATGTGCTCATCCCTCCGCCTCTGCCACATGCCACTCACGACCCCTACACTCAGCCGCCTCCTGCCTCTCACGAGGACCTCCGGCCCCCTCCTGGCCAGGCTCCTGCACCCGACATGGGGCCTCCTCGCTCTCTCGCTCAAGAGACCTTCCGCATTACTACGGTGACCACGCGGAAGCACAGCAACCTCATCACCGTCCCCATTCAGGACGATTCGgcgagctccgcctcccgtgaGCCTCTGAACGCCCCGCCACATCACCACCCAGGAGAGTATCCAGGGCAGCCTGTGGTTTCCCACCCACACCACATGATGGCTCCGCCTCAGCAGCGCTACGggcctccacctcctccacccccAATCACTCATCCAATGCAGCATCCAGCACAGGTCTTCAGCCAAGCCCCTCCTCCACCTTTATCCTCAGTTCCTCCTCCTATCACCCCTCCTCCCGGACACCTCATGAGTCAGCTGCCACCGTACATGAACCATCCTCCACCTGGCCCTCCTCCTCAACACGCGGGTCCAGTAAATGCCCCGCCACCCCACCATTACAATCCTCAGTTCTCTGAGGATAAAGGTACCCTCAGCCCACCATTCAACCAGCCAGGAGGACTGAGTCCTGGGATGTGGCCCGCTCCCAGAGGACCGCCCCCTCCCAGAATGCAAGGTCCTCCTCCGCAGGGACAGATGCCTGGACCTCATCACCCAGACCAGGGCCGATACAGACCCTATTACCAGTAGAATGATTTTGTTGGTAGCTTTGAACGTCGATCTCATAAGTGACTCTGTGGTAGGGGTTTGGAATTCTGTATAGTTGAGTTAGTGTATAAAATAGGACTGCATACGTTTGAAGACTTTGCAATTAATTTCTCATATTAGAACATATACCTTTAATTATGGCCAATATTTTGGATTTAAAACATGTATTtggcaatattttaaaaactttgtcGAATGTGTTGCTTCAGGAATGTATTACGAATTAAATACTCAATGAGGATTGATTTTATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579862.1 lncRNA downstream 85795 19429170 ~ 19430559 (-) True LOC117599445
TU337930 lncRNA downstream 107549 19408270 ~ 19408805 (-) True G285289
TU337929 lncRNA downstream 110226 19405903 ~ 19406128 (-) True G285288
TU337928 lncRNA downstream 111037 19405079 ~ 19405317 (-) True G285287
XR_003403325.2 lncRNA downstream 130491 19369327 ~ 19385863 (-) False LOC113532309
TU337984 lncRNA upstream 40912 19560412 ~ 19560619 (-) True G285331
XR_003403329.2 lncRNA upstream 61354 19580854 ~ 19588244 (-) True LOC113532316
XR_004579877.1 lncRNA upstream 61354 19580854 ~ 19582953 (-) False LOC113532316
TU338031 lncRNA upstream 157340 19676840 ~ 19677595 (-) True G285361
TU338029 lncRNA upstream 159000 19678500 ~ 19679275 (-) False rap1b
XM_026923748.2 mRNA downstream 71903 19432886 ~ 19444451 (-) True def6c
XM_026923040.2 mRNA downstream 88091 19411830 ~ 19428263 (-) True atxn10
XM_034313315.1 mRNA downstream 165694 19335661 ~ 19350660 (-) False pparaa
XM_034313224.1 mRNA upstream 113922 19633422 ~ 19664949 (-) True cfap54
XM_026922602.2 mRNA upstream 152025 19671525 ~ 19676383 (-) True mcat
XM_026923047.2 mRNA upstream 158783 19678283 ~ 19735232 (-) False rap1b
XM_026923046.2 mRNA upstream 158783 19678283 ~ 19735232 (-) True rap1b
XM_034313287.1 mRNA upstream 340001 19859501 ~ 19868173 (-) True dyrk2
trnae-cuc_38 other downstream 1303961 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1328356 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1423810 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1425732 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1432500 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 793567 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 902901 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1941326 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1941326 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1941327 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile