RNA id: XM_026923723.2


Basic Information

Item Value
RNA id XM_026923723.2
length 2907
RNA type mRNA
GC content 0.49
exon number 22
gene id strip2
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17990629 ~ 18023472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGGCCAGCGCTGTTgttgatggGTCCATGGAATCCCCCAACCTGGAGTTTGAGTATGGGGACACAGACAGTCTGACTGCAGAACTCtcagaGCTGTACAGTTACACTGAGGAGCCTGAGTTCAGTCTGAACAGGGACTGCTTCGAGGAGGATTTTCGGAGTCATGtgaaggGCAGGAGATGGGTGGAGCTGAGTGTGGACGAACAGAAGGCATATATCATGCGACTACTGGATGCTCTAGAGGTCACGGACAGAGACAAGAGACTCAAAGTGGCTCGGGCTATACTCTACCTGGCTCaggGGGTGTTTGATGAGTGTAACACAGAAGCAGATGTTCTCCACTGGTCACGACACAATGTCTTTCTTCTCTATGAAATGGGCATCTTCACTGCACTGTTGGAGCTGCTCAGCATGGAGATTGATAATAACCAGGCATGCAGCAGTGCTGTCAGGAAACCTGCCATATCCCTGGCAGACAGCACTGAACTCAGGGTTCTACTGAGCATCATGTATCTGATGGTGGAGACGATCCGGGTGGAAACAGGAGACGACAAGCCGGAGTGGCGGAAGGCTCGAGAGTCCTTCAGAACTGAgctggGTTCCCCACTCTACAACGGGGAGCCTTTCGCCCTTCTCCTCTTCACCATGGTAACCAAGTTCTGCAGCATGAGCGCCCCCCACTTCCCAATGAAgaaagtgctgctgctgctgtggaaGACTGTACTGttCACTCTGGGTGGTTTCGAGGAGCTGCAGGAGATGAAGGTTAAAGGGAGAGAGAAGCTGGGTCTGCCGCCGCTCCCTGAGGACAGTATTAAGGTGGTCCGGAGCATGAGAGCAGCCTCACCCCCAGCCACCGCCATGGAGCTCAttgaacagcagcagcaacagaaAAGAGGACGCAGGAGTCGCAggAGTGCCTTTGTTGATAGCTTGGAAGGAGACAGTCCCTTTGCCAAGAAGCAGCCTCTGGTCAAGCAGGACAGTCTGGACACCTACAACGAGCGGGACCCCTTTAAAAATGATGACGCACGGGACGAGGAAGATGACGCCGAGGATGTGGACAGTGGAATAGAGGGTGAGGTTGACCCTCTCGACCGTGATGTCATCATCCAGCCCCCTCCTCCTCCGCCCCCTCTGCGGCCTCCTACTGAGAGAGTGACCTTCCCTAAAGGGCTACCGTGGGCACCTAAAGTCCGagagaaagacatcgAGCATTTTCTAGAGACCAGCAGGAACAAGTTTATCGGCTTCACCCTGGGAAGTGATACAGAGACCTTGGTTGGGTTGCCCAGACCCATTCATGAGAGCGTGAAGACTCTTAAACAGCACAAGTACGTCTCCATCGCCGAAGTACAGATCAAGCGAGAGGAGGAACTGCAGCAGTGCCCCATGACCATGGGGGAGGAAGAAGTGGAAGAGACTCCTGCAGAAAGCCTATATGTGGGAATGCTTCCAAGCCTTTCTCAGTATGTGATTGCCCTGTTGAAGCTTCTTCTCGCTGCAGCTCCAACCTCTAAGGCCAAGACCGACTCCATCAACATCCTGGCTGATGTTCTTCCTGAGGAGATGCcCATCACTGTCCTCCAGAGTATGAAGCTGGGCATTGATGTGAACAGACACAAGGAGATCATTGTCAAGGCCATTTCTGCGCTGCTGCTCCTCTTGCTGAAGCACTTCAAACTTAACCATATATACCAGTTTGAGTATGTGTCCCAACACCTGGTGTTTGCCAACTGCATCCCTCTCATCCTCAAGTTCTTCAACCAAAACATCATGTCTTACATCAGTGCTAAAAACAGTATCTGTGTGCTGGATTTCCCTCACTGTGTGGTCCATGAGATGCCTGAACTCACTGCTGAAAGCCTGGAAGCTGGAGACAATAATCAGTTCTGCTGGCGGAATCTGTTCTCGTGCATCAACCTTCTGCGGATCCTCAACAAACTCACCAAGTGGAAGCACTCCAGAACCATGATGCTGGTGGTGTTTAAGTCTGCTCCAATCCTGAAGAGGGCACTGAAGGTCAAGCAAGCCATGATGCAGCTTTATGTCCTCAAGCTCCTCAAGATTCAGACCAAATACCTGGGCCGCCAGTGGAGGAAAAGTAACATGAAGACCATGTCAGCAATTTACCAGAAGGTCCGGCATCGGCTTAATGATGACTGGGCTTATGGGAATGATATTGATGCACGGCCGTGGGACTTTCAGGCAGAGGAATGTGCGTTGCGCGAGAGCATTGAGAAGTTCAATGCACGGCGGTACGATAAGAACCAGAACAGTGAGTTTGTCCCGGTGGATAACTGCCTGCAGAGTGTGCTAGGTCAGCGAGTCGAGCTGCCCGAGGACTTCCACTACAGCTATGAGATGTGGCTGGAAAGAGAGGTCTTCTCCCAGCCCATCCAATGGGAAGGCCTGCTGCAAGCCCAGTGATGCAACAAGATGTTAACTGGAACTAGACTGATACAACCTGTTCACAAGCAtcccacatgtacacacacacatgcagacagagCACATGTGCCAGTTCTATTCTTCCTGTAAATGAATGCTTGTAAATAGAGATATCTTCAAAAACAATGTATGGGTTGTGACATGGTAACCTGTTTCATTTGTGAAACACCATCCACTCACGTGTACTCCTGACGAAAATATGAAAGACAACATATCCTCCAGTTCAACCTTTACATTGTATACAAACGaccatttaaaatatgaatacagTAGAAGTACGTATTATAAGTATGTCCTACAAAAAGCGtgaaggtatttatttatttatctattctTTTCAAATTTTCTCAGTCTGGAACTGCtgataaaacttttatttttgatgCATATTCCCttatgtatataaaacaaaaagaatgcaTGTTGTCAAGCTAAAGAGACCTGGTTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336874 lncRNA downstream 89362 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 92399 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 139735 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 199866 17790534 ~ 17790763 (-) True G284295
TU336814 lncRNA downstream 225700 17762031 ~ 17764929 (-) True G284294
TU337033 lncRNA upstream 5994 18027734 ~ 18029915 (-) False ahcyl2b
TU337055 lncRNA upstream 66914 18088654 ~ 18088942 (-) True G284520
TU337057 lncRNA upstream 70477 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 158639 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 324713 18346453 ~ 18346836 (-) True G284590
XM_026923556.2 mRNA downstream 2349 17978763 ~ 17988280 (-) True LOC113532261
XM_034313216.1 mRNA downstream 19385 17907628 ~ 17971244 (-) True ano2b
XM_026922878.2 mRNA upstream 6547 18028287 ~ 18067585 (-) False ahcyl2b
XM_026922877.2 mRNA upstream 6547 18028287 ~ 18067585 (-) True ahcyl2b
XM_034313388.1 mRNA upstream 46858 18068598 ~ 18082361 (-) True tmem209
XM_034313059.1 mRNA upstream 75887 18097627 ~ 18106446 (-) False slc5a8
XM_026923816.2 mRNA upstream 75887 18097627 ~ 18106446 (-) False slc5a8
TU337036 other downstream 10383 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other downstream 10383 17978785 ~ 17980246 (-) False LOC113532261
trnar-ccg_5 other downstream 886992 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 1025742 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2813016 15174348 ~ 15177613 (-) False LOC113531972
XR_004580005.1 other upstream 49007 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 61498 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 62043 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_13 other upstream 68811 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_14 other upstream 70733 18092473 ~ 18092544 (-) False trnaa-ugc_14

Expression Profile