RNA id: XM_026923733.2


Basic Information

Item Value
RNA id XM_026923733.2
length 1043
RNA type mRNA
GC content 0.42
exon number 8
gene id tnni4a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18225500 ~ 18233739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAGTGAGCCATTCACATGTGGGAGGAGAGGCATCAGTCATCAAAAATCCACCACACTGACCTGTTCTCTGCCTGACTGCTCATTCTTGCTGACTTCTCGTTACAGGACACATAGTGCAGTGTGACCATGTCTGAGGGACCGAGGAAGTCCAGATCGAAATCCAAGTACCCGGCAACACGTAGGCTGCTGCTGAAGACCAAACTTCTGAAGAAGGCAGAGAGTCTCCTGGTAAAGGAAAAAGAGCAGAAGAAAATAGATCGAGACAATGTTCTGAATGAGAGAGTGCCTCCTCTAAAGCTCTCTGGACTCTCAGTACAGGAGCTTCAGGTACTTTGTAAAGATTTGCACCAAAAGATTGACATTGTGGATGAGGCTCGTTATGACCTTTCGATAAAAGTGGCCAGAAATGATTCAGAGATTCAATCACTGCAGCAGAAGATCTACGAGCTGAAAGGGAAGATGAACAGACCCAAACTGAAGAGAGTGAAGAAGTCGGCGGATGACAAGTTGGGAGCCCTGACAGACACTATGCACATGAAGGCCGACTTCAAAGCCAACTTGAAGACtgtgaagaaggaggaggaaaagCAGAAAGAGGAGGTGACAGACTGGAGGAAGAATGTGGAAGCCATGTCTGGGATGGAGGGCAGGAAGAAACTTTTCAATGCTGGACAGTGAACCAACAACATCCTgcagtgcttttaaaaaaattaatgttgcagaaaaaaCTATGTTTGATTAATTAGAAATATTTCCCTAAAGAACTCCGTATGGACTTATCTTGATGCAGtttcttgtgtgtatgtgtgtctgtttcgTCGTGTGATTGTTGAATATCTCAAAAATGTAAAGAGATTAGGCGTTTATGTCTTGCGTAGAGTACTGATCGTTGTTTTGAAGCTAAATTATGGAGCATATTATCAGGAGAGATGGATTAGACGGTAGAACAACATAATATTCCTATCATACcaactgtgtaaatatttgatTCATATTCAGTGTGATTAGGCTGAATAAATTTACTCTGTTTCCTCGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337106 lncRNA downstream 40508 18180379 ~ 18184992 (-) True G284559
TU337057 lncRNA downstream 132961 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 136558 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 195585 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 324233 17901025 ~ 17901267 (-) True G284352
TU337140 lncRNA upstream 112714 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 465182 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 586203 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 597186 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 628106 18861845 ~ 18862152 (-) True G284882
XM_026923661.2 mRNA downstream 13796 18156824 ~ 18211704 (-) False cald1a
XM_026923664.2 mRNA downstream 37502 18156824 ~ 18187998 (-) False cald1a
XM_026923662.2 mRNA downstream 37502 18156824 ~ 18187998 (-) False cald1a
XM_026923660.2 mRNA downstream 37502 18156824 ~ 18187998 (-) False cald1a
XM_026923369.2 mRNA downstream 68940 18145977 ~ 18156560 (-) False tnnt2e
XM_026922920.2 mRNA upstream 250701 18484440 ~ 18593405 (-) False dock4b
XM_026922918.2 mRNA upstream 250701 18484440 ~ 18593405 (-) True dock4b
XM_026922919.2 mRNA upstream 253284 18487023 ~ 18593405 (-) False dock4b
XM_026923597.2 mRNA upstream 431470 18665209 ~ 18675567 (-) False tmem168a
XM_034313317.1 mRNA upstream 431470 18665209 ~ 18675445 (-) False tmem168a
trnae-cuc_38 other downstream 13107 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 37502 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 132956 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 134878 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 141646 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 2079328 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 2188662 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 3227087 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 3227087 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 3227088 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile