RNA id: XM_026923776.2


Basic Information

Item Value
RNA id XM_026923776.2
length 2644
RNA type mRNA
GC content 0.43
exon number 6
gene id shisal1a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12488395 ~ 12517683 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacgtgcgctctctctctcctcagttATTCTCTCAGGATCAGTCTATACCTCACTCTGTGTtaccagtgtgggtgcaggatTGAGTGCAGAGAAAGTGTGCagttctcctcctcctctctctccatttgTTTACTCTGTatgtcccacacacactcctaactGGTTTTTACTTCACAGCTGCTGCAGCAGTAGAATGTGTGGAGCAGTGGACTGTCTCTATCCGGGCTGCGTGAAGAACACGTTCAATATGCTGCACGAGGCTGCAAACTGATTctccaaaggaaaaaaaaaaaaacaagaggaaCACAGGCTCCAGAATTATTCAGTCATGGCATATAAAAGCAGAGGGTTGGTTTGCATCCGAGACACACAGCAGATGTCCAAATTCACAGCGGACCATGAGtttgCAGCATGACGAGTGTAAGCAGACGAAAGaaagcaatgtgtgtgtgttaggtcacacctccctctctctcctgcgcctttcttttcttcatgaGGACAGAGAGATGACCATGCGAGGCCACTGGTCCTCCAACACCCTGGCTGTCATCTTCCTCCTGCTCTCCACTGCAGCTCTTTCAGCACACTTCAGAGTTTGCGAACCCTACTCTGACCACAAAGGGCGCTATCACTTCGGCTTTCACTGCCCTCGCCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCACAACAACACAGCCTTCAAGTACTGCTGCAACGAGACCGAGTTCCAGGGCATCATGCAGCTCAACCTCACCACCACCTCAGATGGTTTCGCTCACAATAATTACACCGCTCTTGTTGGTGTGTGGGTTTATGGTTTCTTCGTCATGATTCTGCTGGCTTTGGACTTCTTATACTATTCAGCCATGAACTATGAGGTGTGTCGTGTCTATCTGGAGAAGTGGGGACTGGGCGGTCGATGGCTGAAACAGGCCAGGAGCCAGTGGCACAGTGCCACCATAGCACAGGAGGGAGATCCGAGCTCAGGGACAAGTCTGAGCCAAGGCCCTCACCAACAACATCATCCCAGACAGAGTTTAAGAGGAGAGGTGGAGAGTCCTACCCTCCTGACCTTCCAGACCTCCACAGCATGATACTTGAAGCTTGACTCATTAGGATGTACTGTGCTTTTAAGGGCAGGAGAAGCCAAGGAGAAATAGCCACAGAAAGCTCACTGACTTTTCACAGAGTGACTCTCTGGGTTTGTCTCCCTATTTGtgatgtggattttttttttttttttgctccactGTGATGTTCAGTGAGGAAACCTACTTAACATAGTTGTCTGATCACCTGATCCCTATCTGCGCTACAGGAGAAGCACTATCTCTGACCATTCAACTGCAAAGCATCGTGATGTAAATGGCTGCCTGCGTCAAGAGAAAAGTGTGTTCTCTTATACTACTCACAGCACAAGGTGAGATGGACATCAGATTTTTCAGACTGCAGTAAACACAAGGCAAACTCTAGATACTGAATGTTCCCTTATACATCTCAGCAGGAAAAGCAgaggatattttatttattcaacgATTGTACTGGTTCTGTAGTGCTTTTTAAGTTAAAGGAATTTGgctagaaatgaaaatgaaattcaagACTTaacgaaaaacaaaacaaaccaaaaataaaagcatattgaTTATCTGAGATAAACCTTTTTTCACAGAcaaccaaaataataaatacatgggtttgaaaaatgtcaaaactgAAAGTTTGTATATGATCAGTATCCACGCGTTAATATCACTTGTTGACAGTGATATGTGTACTCTTGCAATAGTACTTCTGAACTACTGAAGTTGAGAATGTCAGATAAAGCAATATGTCATGCTAGAAAATCATGAAGACGTACGGTGGATTTCACGTGTGTGATTGTTCCTAATGAATTACTTGATTATGTGGTACTATTGCCTCATagagctttttttctttaggcTGGCCTCATGGTGCATTTACATTGTCGTGAAATGAAACAGCTGATTTGGAGCTCTCCAGAGTAAATCTATAGTATCTgcatctgtgcttttttttttttaacacatatCCATATAAGTACAGAATGAAGAATACGAGTAGCAAGAAAAGCtgatacagttattattatctCTTCCCTCTTGTGCTAGCATCTGAAACTGATCTAAGAGATTATGTTATCTGTGGCCATGACATGAACCCTTGCTTTGGCAGCAATGTGAATGCACCTTTGGTAGAAATCCTGCCGGTAGCTTTATTTTCCCATGTGGAAAACGTGCACTGACTTCAGGTGAGTTAATAGGAATAGTCAAAGCGAGTAGTTAGTCAACCTGCAATAAAGCACAGTATTGTGTTGCATTACATTGTGATAGAAAGAAACCTTTTTGTGATGTTGTTATCAGTGTTTTAGGTGACTCTAAATTCTCCTCCTAGCAGCCAGAGACATACTCGGTGGTACAGTAATGAGtactgatgatggtgataagTTGCCTTACTGTAAAACTATTGTACACCTAGCACCAGTTTTGATGTGGGTTTTACGACTGTATGAAGTGTTTGGATGCAGTTTTGTTGTAATTGCACTTGTTAACTTTTTACTGTCacaagctgaaaaaaataaagatctaTCTTTTGCAGTGTGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 10766 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 29303 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 119130 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 234240 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 394336 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 628606 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 650999 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 741476 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 802497 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 802497 13320173 ~ 13321414 (-) True G282006
XM_026923619.2 mRNA downstream 36810 12445898 ~ 12451585 (-) True si:ch211-214j24.10
XM_026923617.2 mRNA downstream 53204 12430448 ~ 12435191 (-) True apex1
XM_026923527.2 mRNA downstream 73321 12411859 ~ 12415074 (-) True LOC113532240
XM_026922708.2 mRNA downstream 78865 12402179 ~ 12409530 (-) True LOC113531803
XM_034313232.1 mRNA downstream 93874 12375791 ~ 12394521 (-) False mapk11
XM_026923288.2 mRNA upstream 52392 12570068 ~ 12579954 (-) True cmasa
XM_026923289.2 mRNA upstream 67161 12584837 ~ 12588680 (-) True kcnj8
XM_026922806.2 mRNA upstream 74411 12592087 ~ 12636416 (-) False abcc9
XM_026922804.2 mRNA upstream 74411 12592087 ~ 12636416 (-) True abcc9
XM_026922809.2 mRNA upstream 74411 12592087 ~ 12633220 (-) False abcc9
TU333129 other downstream 828068 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 900371 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1229003 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1481252 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2192274 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 63247 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 2656672 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4440848 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4585889 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5461109 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile