RNA id: XM_026923799.2


Basic Information

Item Value
RNA id XM_026923799.2
length 6329
RNA type mRNA
GC content 0.53
exon number 27
gene id kdm5a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16663927 ~ 16685402 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAGGGTAGGAAAAACTAACTCGGGAGTGGTGTAGTGTAGGGTTTGTGTTCAATTCGACCTACTGTTTTTTTGGAACGACAGATGATAGACTTTAACTACACTTTATGGAATTTAACCCAAGGGTTTTATTTCGGGAAAAATAACGCATTAGTGTAATGGTGTTCCGGATGTAGGCTGGTATTCGTACGTGGTACAAAGTGGTTGAAACGCGAGTGTTTTCACGTCGTTTGTACTTGAAGGCCACAATCATGGCGATgagaacatgaactgaagcagTTCCGGTGTCTCCCTTGTGTCTTTCTTTAGTTCTGCGACCCGATCATGCATGCAGCCCTGACGCTTTGGGAAGTATGTGTGCTGCTCTTGTAGGTGTGTGAAGATCGCGTTGTTGTGAAGTGAAACTCGAGGCTGAAGCAGCATCATGGCTGTGTACACCGAGTTCCTGCCTCCTCCGGAGTGCCCGGTGTTTGAGCTGAGCTGGGAGGATTTCTCTGATCCGCTCGGCTTCATCAGCAAGATCAGACCTATCGCAGAGAAAAGCGGCATCTGCAAGATCAGACCACCTCAGGACTGGCAGCCTCCTTTCGCTTGTGATGTCCGCAACTTCCGCTTCACTCCACGAGTCCAGCGGCTCAATGAGCTTGAGGCCCTCACCAGAGTAAAACTCAACTTCTTGGATCAAATTGCGAAGTTTTGGGAACTCCAGGGCTCTAAACTACGCTTTCCACATGTGGAGAGAAAAATCCTGGACTTGTACCTTCTCAGCAAGATTGTGTCTTCTGAGGGAGGTTTCGAGGCTGTCTGTAAGGAGAAGCGCTGGTCCAAGATAGCCACTCGTATGGGTTTCCCAGCTGGGAAGGGCATTGGATCCTTGTTGCGCTCTCACTACGAGAAGATCCTCTACCCATATGAGCTCTTTCAATCTGGAGCTTCACTCTCCGGCATCCACCGGCTGTGTCAGGAGGGAGACGAAGCTGAAGAGGTGGATGAAGGAATAGACCGTGGCtgtgaggaggatgaggaggatgaagaagagAAACCTAGAGAGAAGGAAGACAAGGAGCGAGATGGTCTGAGTGACAAGTCGCAGAAGAAGGAGCACACCATTCCTGAGAGACGTTCACGACGCCTGAAGTCTGAGagagagaacaaagagcCCAAAGGCCTGCAGATCTTCAGCAGCAGTCCTAAGGTGGTGGATTTTGAGATCGTTCCTGCCGATGACGCTTTCATAAAGAAGCAGAAGCACCTGAAGGCTCAAGCATTTGCTATTAAGATGCGTCCACGCAAACAGACTCTGGAGGTCAATTTTATTGACCTGTACATGTGTATGGCGTGTGGGCGGGGTGACGAGGAGGACCGCTTGCTGTTGTGTGACGGCTGTGATGACAGCTACCACACCTTTTGCCTGATCCCACCCCTTCAGGATGTGCCCAAGGGTGACTGGCGTTGTCCCAAGTGTGTGGCAGAGGAGTGCAGCAAGCCCCGGGAGGCATTTGGGTTTGAGCAGGCCGTGCGTGAATACACACTCCAGAGCTTTGGAGAGATGGCAGACCATTTTAAATCTGACTACTTCAACATGCCAGTTCATATGGTCCCTACAGAGCTGGTGGAGAAAGAGTTCTGGAGGCTGGTAAGCAGCATAGAGGAGGATGTGATAGTCGAGTATGGAGCAGATATCAGCTCCAAAGATGTGGGGAGCGGCTTTCCTGTCCGAGACGGAAAAAGAAGACTATTGGGGGACGAGGAGGACTACAGCAACTCAGGCTGGAACCTGAACAACATGCCAGTGCTGGAGCAGTCCGTGCTTGCCCACATTAATGCAGACATCTCGGGGATGAAGGTACCTTGGCTTTATGTAGGCATGTGCTTCTCTTCCTTCTGCTGGCACATCGAGGACCACTGGAGCTACTCCATCAACTATCTGCACTGGGGAGAGCCTAAGACCTGGTATGGAGTCCCAGCTCATGCGGCAGAGCAGCTGGAGGCGGTGATGAAGAAACTGGCACCAGAGCTGTTCGACTCTCAGCCTGATCTACTGCACCAACTGGTCACCATCATGAACCCCAACGTTCTAATGGAGCACGGTGTTCCAGTGTATCGAACCAATCAGTGCGCTGGAGAGTTTGTGGTGACCTTCCCGAGAGCCTATCACAGCGGCTTCAACCAGGGCTACAACTTTGCTGAAGCTGTCAACTTCTGCACTGCAGACTGGCTACCCATGGGCCGTCAGTGTGTGGCGCACTACCGGCGGCTGCAGCGTCACTGCGTGTTCTCCCATGAGGAGCTGCTGTGTAAGATGGCGGCGGACCCTGAGAGCCTGGACGTGGAGCTGGCTGCAGCCGTGTGCCGAGAGCTAGCAGAGGTGATCGAGGAGGAGAGCAGACTCCGACAGGCTGTTCAGGACATGGGGTTGCAGTCTTCAGAACAGGAAGTGTTTGAGCTGGTTCCAGATGATGAGCGGCAGTGTTACAAGTGTAAAACCACCTGCTTCTTGTCTGCTCTGACGTGCTCGTGCAGTCCAGAGCGCCTTGTCTGTCTGCACCATGCTGTTGATCTCTGCAATTGTCCTCTTACGAACAAGTGCCTcagGTACCGGTATGATGTGGAGGAGTTCCCTGCCATGCTGTATGGGGTAAAGTCCCGCGCCCAGTCCTATGATACCTGGGCCAAAAGAGTCAGTGAGGCACTGTCAGCTGATCAGAAGAACAAGAAAGaTCTTATCGAGCTAAAGGTGTTGATGGAGGACGCAGAGGACAGGAAGTACCCAGAGAACAATCTGTTCCGTAAGCTGAGAGAGATGGTGAAGGAGGCGGAGACCTGCTCTTCTGTAGCCCAGCTTCTGCTCAACCACAAACAGAGACACAAAAGGGAGCGCACAGAGATCAGTCGTACACGCACCAAGCTGACGGTGGAGGAGCTGAAGGCGTTTGTGGAGCAGCTGTTCCGTCTGCCATGTATCATCAGCCAGGCGCGGCAGGTCAAAGAGCTGCTGGAGAACGTGGAGGACTTCCACGAGCGCTCTCAGCTGGCCCTGGCAGACGAGACCCCAGATTCGGCTAAGCTGCAAGCTCTGGTGGAGCTGGGCTCAGGGCTTGATGTGGAGCTGCCAGAGCTGGCGCGTTTGAAGCAGGAGCTGCAGCAGGCCCGCTGGCTGGATGAGGTGCGTCTCACCCTGCACGAGCCACACCGAGTCACACTTGAGCTCATGAAGCGCCTCATCGACTCGGGTGTGGGTCTGGCCCCGCACCACGCTGTGGAGAAAGCCATGGCTGAGCTGCAGGAACTCCTCACTGTGTCTGAGCGCTGGGAGGACAAGGCGCGTGCATGCCTGCATGCCAGACCTCGCCACAGTATGGTCACCCTCGAAAGCATCGTTGTAGAGGCTAAGAACATCCCTGCCTATCTGCCTAACGTTCTGGCTCTCCGGGAAGCTCTCCACAAAGCCAAAGAGTGGACAGCAAGAGTGGAGGCCATCCAGAATGGCACCAGTTATGCGTACCTGGATCAGCTGGAGGCTCTGCTAGCGAGGGGCCGCTCCATTCCTGTGCGTCTGGACGCCCTGCCGCAGGTGGAATCCCAGGTAGCTTCAGCACGAGCTTGGAGAGAGAGGACAGCGCGCACCTTTCTTAAGAAAAACTCCACCTACACGCTGCTACAGGTTCTGAGTCCCCGGGCTGACATTGGTGTGTACGGCAGCAGCAGAAGCAAGCGCAGGCGAGCCAAAGAGCTGCTGGAGAAAGAGCGTGGTGCGGAGCCGGAGAGCCTGAGCGACCTGGATGAAGCCGCAGACGAGGAGCGCTCACCCTCTGCCGTGGTGGCTGCCTTTAAGGCTCAGGAGCAGCAGGAGGCAGAAGCCATGCACTCGCTACGGGCCGCCAACTTGGCCAAGATGAGCATGGCCGAGCGCATTGACGAGGTCCGCTTCTGCCTGTGCCGCAAGACGGCGGGAGGTGTAATGCTACAGTGCGAGCTGTGCAAAGACTGGTTCCATGGCGCCTGTGTGCCCCTGCCCAAAGCAGGCTCGCAGAAGAAGCTGACAACAGGCAGCAGCTGGCAGAGTGCTAGCAAAGAGTCAAAGTTTCTGTGCCCATTATGCCAGCGTTCGAGGCGACCCCGACTCGAGACCGTCCTTTCGTTATTAGTGTCCCTGCAGAAGCTTCCCGTGCGGTTGCCTGAGGGCGAGGCGCTGCAGTGTTTGACAGAGCGTGCCATGAGCTGGCAGGACCGGGCGCGGCAAGCCCTGGCCACCGACGAACTCTCCTCTGCTCTAGCCAAGTTGTCTGTGCTCAGCCAGCGCATGGTGGAGCTCGCAGCACGCGAGAAGACCGAGAAGATCATCAACGCCGAGCTGCAGAAAGCTGCCGCCAATCCAGACCTACAGGGACACATTCAGACTTTCCAGCAGGCCGGATTCAACAGGGCCACCTCACCACGGACATCTCTAGACTATGACGATGAGGAGACGGACTCAGATGAGGACATCCGTGAGACTTACGGCTATGACATGAAGGACTCAGGTGAGGTAAAGCCCTACTTGTTCTGTGATGAGGAGATCCCTGTGAAGTCAGAAGAGGTTGTCAGTCACATGTGGCCGGCCACGCCCTCTTTCTGTGCTGAACACGCCTACTCCTCTGCCTCTAAGTCCTGCCCCCAGAATCCAACCACTCCAAGGAAACAGCCCAGGAAGACGCCCCTGGTGCCACGCAGTTTGGAGCCTCCGGTGCTGGAGCTGTCCCCTGCTGCCAAAGCCCAGCTAGAGGTTCTGATGATGGAGGGAGACCTGCTGGAGGTCTCTCTGGATGAAACTCAGCACATCTGGAGAATCCTGCAGGCCACACACCCACCCTCAGAGGAGCGCTTCCTGCAAGTGGAGTCGGAGGACACTCTTCTGGAGAAGCCAATGAAGCTAAAGGTGAAGGAAatggagaagaagagaaagaggaaactggagagagctgagcagcagTTACTTTTGGCCTCGTCAGGCGTGGAAGGCCGGCCCAAGTGCAAAGACATGAAGAGGGTACTCGAGGTTGGTGGCAAACCCAAAAAGAAGAAGCTCAAGCTCAGCCCGGAGAAGTCACGTGAGCTGAAGCAACTGGCCAAGCGCCTCGCcaaagaggagaaggagaggaagaggaaggagaaagcTGCGGCCAAAGCCGAGTTCGCCAAGGAGGGtctggagaagaagaaggagaagaagatcCTGGACATCCCCTCTAAGTACGACTGGTCAGGTGCAGAGGACTCCAACGACGAGAATGCTGTCTGTGCAGCAAAGAACTGCCAGAGACCATGCAAGGATAAGGTGGACTGGGTTCAGTGTGACGGAGGATGTGACGAGTGGTTCcatcaggtgtgtgtgggtgtgtcatgCGAGATGGCCGAGAACGAAGACTACATCTGCTCGGCTTGCTCGCGAAAGGCCGGCGGAGTGATGGGAGTCAAAGTGGGTGTAGAGACTGTGGTAATGACGTCAGCCATGTGTAGCACACAGACTCTCTCCCCCCTGTACCAAGCAGAGGTTCAGGAGGGCAGCtagcacaccacacacacacacacacacacacacacacacaccctacaacTGCTGTTGCACCTCCACCGCAACCTCTCCTTCTTTGTGTACTTGCGAAGCAGAAAGCAGAGTGGTACTCTCTGTATCTCCTGTGATTGTCTGGGGAAACTAAGAGCTGACTATGATTTTGGAGAATTCAAGCGTTGCAATCGATAAACAAGAAGAATAAGGATAATGCATGAATAAAAGCAACCAGTCCACTTTTTTTCAAGGTGAATCCATTTAAGGATTCTGTGCATGGACTGTACAATAAATGTGGATATTTAAGGGGGAAATGACTAGATGTGGTATGCTGGAGATTTGCATTGTTCCACCAGACATCAATcttcacttctgtttttttctctataatCTGTCAGAACATAGTGCTGAGCTCTAAGCCTAAGACTAGTCTGTCTCCTGTCATCACACTCGCATTGACTCTAGTTTGTCTCAGCTGGACCAGACTGCATTTGCACAACTCTGTTTTAACCTGcttaaatgaatacattacaaGAAgtatcccacaatgcattgctgGTTTGCTCCAGACATCCCATCACAAACAGCCTGTAGGAGAATTATTAAGCTATTTTATTGATACACCTGCCACATAAACGAGTTACCACACAAATATGTAGGACTAGTTTAAAATGGATGTATGTAggtaaaatatttatgatgtaaatagattttaaagaattaatgagTCAGTGTGGATGTTTTTGTTGCTCTTTATTAAAACGATTCCTAGTGAAACAAA

Function

GO: NA

KEGG:

id description
K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579992.1 lncRNA downstream 44209 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 214161 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 214161 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 215152 16448439 ~ 16448775 (-) False G283546
TU335937 lncRNA downstream 261979 16400921 ~ 16401948 (-) False alg12
TU336181 lncRNA upstream 153133 16838535 ~ 16849762 (-) False LOC113532230
TU336452 lncRNA upstream 356225 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 821474 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 828208 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 836024 17521426 ~ 17523643 (-) True G284135
XM_026923801.2 mRNA downstream 1565 16649072 ~ 16662362 (-) True LOC113532402
XM_026923803.2 mRNA downstream 1576 16649072 ~ 16662351 (-) False LOC113532402
XM_026922862.2 mRNA downstream 16245 16622103 ~ 16647682 (-) False LOC113531895
XM_034313133.1 mRNA upstream 2971 16688373 ~ 16699456 (-) True LOC113531734
XM_026922603.2 mRNA upstream 2971 16688373 ~ 16698853 (-) False LOC113531734
XM_026923299.2 mRNA upstream 83868 16769270 ~ 16771695 (-) True LOC113532119
XM_034313042.1 mRNA upstream 130358 16815760 ~ 16817420 (-) True kcna1b
XM_026923499.2 mRNA upstream 153999 16839401 ~ 16853395 (-) True LOC113532230
TU335292 other downstream 1486314 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4082864 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5003600 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5075903 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5404535 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 273122 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 418163 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1293383 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1293383 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1385345 18070747 ~ 18082361 (-) False tmem209

Expression Profile