RNA id: XM_026923816.2


Basic Information

Item Value
RNA id XM_026923816.2
length 3250
RNA type mRNA
GC content 0.44
exon number 15
gene id slc5a8
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18097627 ~ 18106446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCACTAATACGAGGACATGCTCTTCATTTTATTGACTCCTCAGCTACTTTTACTCATCATTTATTCTTAATAAATACTCATTTTTATTGGTGTTATACACACTGACTCTATACTGAGTCTCACTTTGCATCAGAGCCCAATGGAGAATCCAGCAGCAGCCTTCGGTATTTGGGACTATGTGGTTTTCGCTCTCATGCTCGTCATCTCAGCGGCTATCGGTGTTTATTATGCCGTCATCCAGCACAGAACGCAGACTCCCAGGGATTTTCTGGTGGGTGGCCAGAGTATGACGGCTGTGCCCGTTGCTCTGTCACTGACAGCCAGCTTCATGTCAGCCATCACGGTGCTGGCGACTCCAGTGGAGGTGTACTGTAACGGGGCTATCTTTGTTTTAAGCTGCTTAGGCTTTGTCCTGATGGTGGCCATCAGCTCAGAGTTCTTCCTCCCCATCTTCTACAGGCTGGAAATTACCAGCACCTATGAGTACCTGGAGTTGCGGTTCAACAAAGTGGTTCGGCTGTTTGGGACAGTGCTGTTCATCGTTCAGACATTAGTGTACACTGGAGTGGTTATCTATGCACCAGCTTTGGCTTTAAACCAAGTGACAGGTATAAGTCTGTGGGGAGCTTTGATATCAACTGGAGTGGTGTGTACCTTCTACTGCACCTTGGGGGGATTCAAGGCTGTGGTGTGGACTGACGTATTCCAGATGATCATCATGTTGGTGCATGTTGGTCAATCGGTGTTTCTACAGGGCGGGGTCTCTGTCATCTTCAACAACTCTGCTGACGGTGGCCGACTCAACCTGTGGGACTTTGATCCCAACCCTCTGAGGAGGCACACGTTCTGGACCATCATCATCGGCAGTACATTTATCTGGACCAGTATGTATGGTATTAATCAAGCTCAGGTGCAGAGATATGTGTCCTGCAAAACACTTCTCCATGCCAAACTGTCTCTGTATATAAACCTGGTGTCACTCTGGGCCATTCTTCTATCTTCAGTATTTTGTGGGTTGTGTTTGTATTCATTTTACAAGAACTGTGACCCATGGACAGCAAAAATGGTGTCTGCTCAGGACCAGCTCATGCCGTACCTGGTGATGGACATTTTGGGGGACTACCCTGGCATTCCTGGCCTGTTTGTGGCAGCAGCATACAGTGGCACATTGAGCACAGTCtcctccagtgtcagtgcccTAGCTGCAGTGACAGTTGCAGATCTGATACGACCGTACTTCAGCTTGTCAGAGCAAAAACTTTCCTGGGCATCAAAAGGACTGAGTGTGTTCTATGGAGTAGTGTGCATTGGGCTGGCTGCTCTTGCATCTCTGATGGGAGGATTGTTACAGACAACTATCAGTATTGTTGGTACTATTGGTGGACCTCTACTCGGCCTCTTCTCTTTAGGCATCCTGTTTCCCTCTGCTAATTCCAAAGGAGGCTTGGCTGGACTGATCAGTGGATTAGTTGTGTCCCTCTGGATTTGCGTTGGAGCCCAGGTCTACCACCCGCTACCGGAGAACATCAGGCCTcttcctctacacacacacggCTGCAGCGTCACCACAGATGAAAATGACTTAATGAACTGGACTAGCTACTCAACACAGGCAAGCTATGTCACTTCAGCTGAGCAGGACAAAGCTGTGGACAgGCCTCTGCTGGCTGATTATTGGTACTCACTCTCTTACATGTATTTCTGCCCTATGGGGACTTTAGTTTGCATAGTTATTGGGCTGATTGTGAGTTTGTTCTCAGGGGGTAGAACATTAAAATTGGAACCAGGCCTGACATTAACAAAGGAGGATTTAACCTGCTACAAGATCTACAAAATACTAAAGCAGAAGgcTACAGGAAATGCAGACAGACTTGACCTGGTTATGGAGAAGGAGAAATCTGGCAGAACCAACCTTGCATTTTGTGATGTGGAGCTGGATATCACAAAAATTCAGGCACACAAAACTCTTGCATAGGACATTTTTAGTTGTCTTTGAACTCATCTTCTCTGACCTCATTACTAAAGCGAGGACTTCATCCTGTCAGCTTAACCCATTCATACCTTCCATCTCCAGGCTTGTGTACCTGTCACATGTCCTGATACACAAtttcctatcaaacctcaaGCTTTAAATCTTAAGCTTGCCTGAAGTTCTACAGTCGGCATTTACACTCAACATATATTTTTTGACGAAAAATATATTGCAGTTCTCCATGAATTTCATCAAGCTCTGACACCTGCACTTGTTACCCATCTGAATAGAGAAGTGAGAAGTGTTCTTGTAGTGGATCTTGTTTAAAATGAAGTGACTGGCTAACATTACCAATCTACTTCGAGTGTTTGCTAAGGTCATACAGTCAATAAATTGCTTTGAAATTTAGCTAGCATTACTTACCTTGGTTTATGCAATCACTTCGTTTCCTCAAGCTCGTAATAATAACAGTACAATGAGCTAGCTTAGACATTAAAATGAGCAACATGTTGGAAAATGTGAAGAACTCCCTGCTGAGGGTCTATTAGAAGAGTTTACAGCAGAATAAGACATGGCTCTGCTACAGAACTGTCAAGAGCTTCTGGGGCGTGCTGGAAAGTGTGTGCACGTTCATGAGGCTTGATTGTCATATCCAAAACTGTCAATCCCCTCGTCAACCACtcccttttaaataaaatgcatttattgtaAGGAAAAATACTGGGGGACATCAAGGTCAACTAATCttgtaaataatttgtggagacataaatttaaatttaagttttgTTCCTTCCCCATTCACTGACATGGGAATGTCTGGGGTCAGaaattgtactgcagccagtCACTAGATAGCCTCAGAGACgttttggcttcacttttgacTTCCTGTTAAAAtgtccactcatatatacagtcaatGGAATATAAGCTGTGAGATCATTATGCCAGGGTGTGCTTTTTCTCACTTATTATTCTTCTTTTAAGTGGGGATCCATTATCTACAGTGTAGCAGAATGTTGACTctaagtattcggtcacctgagTTCTGTGCGGCGAGAAGACAAAACAATCAAAGTCGATAAACCTGGGAGATTTTCAATAAAACTGCGTACAGTAGCCGACATGACTGTATACTCAATATGGTAGCATAGTGAAGTGCATACATTATGACTAagccacattttaaataaatgaaggagTGATCTGAGATAATTTCATTCTAATGTGACTATATTGTCTATATTCAATCCTgtattagtattaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337057 lncRNA downstream 5088 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 8685 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 67712 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 196360 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 199397 17895335 ~ 17898230 (-) True G284349
TU337106 lncRNA upstream 73933 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 240007 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 592475 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 713496 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 724479 18830925 ~ 18831139 (-) True G284866
XM_034313388.1 mRNA downstream 15266 18068598 ~ 18082361 (-) True tmem209
XM_026922878.2 mRNA downstream 30042 18028287 ~ 18067585 (-) False ahcyl2b
XM_026922877.2 mRNA downstream 30042 18028287 ~ 18067585 (-) True ahcyl2b
XM_026923723.2 mRNA downstream 75887 17990629 ~ 18021740 (-) False strip2
XM_026923382.2 mRNA upstream 31349 18137795 ~ 18141774 (-) True arl1
XM_026923367.2 mRNA upstream 39426 18145872 ~ 18156560 (-) True tnnt2e
XM_026923368.2 mRNA upstream 39426 18145872 ~ 18156559 (-) False tnnt2e
XM_026923381.2 mRNA upstream 39528 18145974 ~ 18156559 (-) False tnnt2e
XM_034313350.1 mRNA upstream 39531 18145977 ~ 18156560 (-) False tnnt2e
trnaa-ugc_14 other downstream 5083 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 7005 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 13773 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_10 other downstream 14318 18083238 ~ 18083309 (-) True trnaa-ugc_10
XR_004580005.1 other downstream 15266 18070747 ~ 18082361 (-) False tmem209
XR_003403330.2 other upstream 50378 18156824 ~ 18187998 (-) True cald1a
trnae-cuc_38 other upstream 105876 18212322 ~ 18212393 (-) True trnae-cuc_38
TU338301 other upstream 2206621 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 2315955 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 3354380 21460826 ~ 21471100 (-) False LOC113544587

Expression Profile