RNA id: XM_026923833.2


Basic Information

Item Value
RNA id XM_026923833.2
length 2397
RNA type mRNA
GC content 0.37
exon number 9
gene id si:ch73-139j3.4
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8221552 ~ 8226121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGGTAAAACAATCCAGACAGACAGGTAAGGACTTGATAAGGAGAACGAGAATGAGAATGAAAGTTAGGAAAAAGTAAGCTTTTCTCTCAAGaagatttctttttattcaaaAAACAAACCGAGTTTCTCCAgctcagCCTTTATTGCAGCTTGTCTCCAACAACATGAAGGCCGAAGACAAACTGCAGATAGGAAAATTCCTTTTCATGCTGATCAACTCCTTTTTTGTTatttttggTATCAGCCTTTTTGGATCTTCTGTATGGATCTTATTTGACACAAGTAACGTCATAACTGTTTTAAGCAATGACACGGACGTCAAGGTGGTGGCCGGAGGGCTGTTTGTTATCGGTCTGGTGGTTGTGGGCGTCTCCATGTTGGGCTGCATTGGAGTCCACTTAGAGAACAGATGTTTCATTGCATTTTACATGGGCCTCTTAATTGCCATCATTTTTGGTGATCTTTTCATCACCTTGTTACTATTGGTGAAACGGAACCAAATTGGGAGGTTTTTGACTGAAAATGTAGATGCCATCATCAGCATGTATGGGGTTAATGATACACAATCCACCTGGAGTCTTCTGGACAGTGTGCAGCAGTCTGCAAAATGCTGCGGCAGACAGAACGCCAGCGACTGGGagacaaacaaatttattcagcTCCAGAACACATCTTACATTTACCCCTGCTCTTGCTTCAATGGGACCTGCCCCGTATTCCTGGACAATGAGATGTACCGGTTTGGAAATGGTACTCATATCTACACAACGGGCTGTGAGGAGAAACTAAAGGATTGGCTTGAAAAGAATGTACTTGTGATAATAGGCATGGACCTTGCACTCCTAATCATTCAGatcctgcagtttattttgGGATTTCTCATCTACCGGAACATTGTCCCTAAGAGTAAAGCTCACCAATCTGAAAATCTTATCAATGCAATGGAAGAGACCCCAGCATCAAGTTCTGACCCTCACCAAAATGATCAGCAGTACTACCAGTCTTCCATACACACTTCTGACCAACAGCTGCACGATGCCTATAATCAAGAATATCCTGGACAGAGTTATTACCCGTATCACGATCGTCAACATCAGCCCAACATTCATACATATGACCAGAGACAGAATGATGAGTATGACATCGCTGGACCGCATTATGATCAGTACGAAAGCCAACTTTATCAGCACCATCGTAGCCCTGAGCACAACCATCAGATCTATAACCAGATACTTGACGATGGTTATAAACAACAATATGCTGATGCAAGTTATGACCAGTATCCAGAGCAACATTACCAATATGACCGTGACCTGTACCACAGACAGAGCTATAACGGCAATTATAATCAGGGTTATGTTCATGATGACTACAGGAATTactaattattaaaatcataGTCAACTCCAAAATTACTAGCACCTtttaaaagtgcaaaaatgacgcaataataaaaaaaattagaaattagaGAAAACACTTTTAAGCTAACAAATAAATTCTTAAAAGAACAACTTgcttaaataaaagtattttttttctcaacagaAACATCACCATCATTTACAGTAgtacagaatatttaaaataaacattaacaataCTTTTTTTCAATTGCTCTCAGTCTATACAAGCTCTTTGAGCAAATACTATTGCACTTATTATATGGTTAAAAAACATGCATAGTTGTCTTTGCTGTACAAAATCTCACATTAACTTCTGTGTAACAGGGTTTTAGCCTTATGGTATTCCTAGACTATGGAGTATTTCTACTAGTGTCAAGATGTAACATCTTATTTGATTGAGACTTCAATCTTAATTGCACTTCTGTAAGACACTGTGGATAAGATCATCCACTAAATGCTCTAAATGTAACTGCtattcattttataaatttcatttcaaatgttgCTTATTTTCAGtaggggtgccaatagttcTAGGGTTGACCGTATACTCTACGTGAGtgaattctttattttataaatgataGTTGCAACACCTTTGTTTTTGTGATCTCATCCTCATAAGCCATCAGGTCCTGATATTTTTCATAACGTTGGAGagtatgcatttttttcaacTTGGTATTTTATTGATAATACTGTATAATGATGTTATAAAAGTttgtaacatacagtataagagCATTTCCTTATTGACATGTAAGGCATATAAAGATGAATTAGTGGAATAGCAAACTAACCTTGGGTCCATTTTATGTTAGCTCACTTCAATTACTTTGAATTCCAGCTCAAAAATAAAACTGGTTAGCTTACTGATGAATGAATCCAGCTCTGTACATTATACATGTATGTACTGCAAAATATGAGAAAATCAGCAGGATAAATACTGTCAAGTTTTACTGGTCAAGtaaattataaagaaaataaa

Function

GO: NA

KEGG:

id description
K17358 TSPAN19; tetraspanin-19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330636 lncRNA downstream 4259 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 254131 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 342535 7796835 ~ 7879017 (-) True G278520
XR_004579998.1 lncRNA downstream 687271 7530784 ~ 7534281 (-) False LOC117599592
TU330657 lncRNA upstream 12853 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 163377 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 385997 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 472309 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 967495 9193616 ~ 9194003 (-) True G279382
XM_026922658.2 mRNA downstream 106766 8103474 ~ 8114786 (-) True c18h12orf66
XM_026922659.2 mRNA downstream 107518 8103474 ~ 8114034 (-) False c18h12orf66
XM_026922687.2 mRNA downstream 250981 7966873 ~ 7970571 (-) True avpr1ab
XM_026922995.2 mRNA downstream 265388 7946410 ~ 7956164 (-) True hcfc2
XM_026923517.2 mRNA upstream 13634 8239755 ~ 8247746 (-) True tymp
XM_026923507.2 mRNA upstream 23991 8250112 ~ 8281879 (-) False shank3b
XM_026923508.2 mRNA upstream 23991 8250112 ~ 8281879 (-) False shank3b
XM_026923509.2 mRNA upstream 23991 8250112 ~ 8281100 (-) True shank3b
XM_026923515.2 mRNA upstream 23991 8250112 ~ 8276874 (-) False shank3b
TU330637 other downstream 1872 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 153475 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 627744 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2118405 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2188359 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 583099 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 981230 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1396412 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 2043636 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2768984 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile