RNA id: XM_026923836.2


Basic Information

Item Value
RNA id XM_026923836.2
length 2277
RNA type mRNA
GC content 0.45
exon number 11
gene id srr
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15554273 ~ 15563716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCTGGCTGGGCAGTTTCTTGTCAAATAGCTAGCTGATATAAACAAgctttaatgtaatgtatgtgtaaaCATAGGTAGGTAAGTTAGTAGGGTTTTAAAACGACATCATTGTGTgattaatactgtatatatcacacGCGGAAGGAGTTTTCTGCCCGGAACGCCCACACAGAACCACAAACCCGGGGAAGACAATCTGCGGCGCTCCTGCGCTCCTGTAGCCAATAGTCTAGCAAAGcctcaagagaaagagaagagaagagaagttgAGCTGAGCATTTGACTCCACTAAATACACTGTGGGTGCAACATCAGACCCATAATCTACATCTCTAATGCCACACTCCAACGAGCTTCATGTCACTATTTGCCCAAAAGGGAAACGGCCTAAACCTATTTGTATTGGCCCAGACAAGTATAAATGCCAGTTCTGCAACAGGAAGGGGGAGTATGCTGCGCTTGTGGCTCACATACAGACCCATGAGAAAACAGCTATTgaatttcaagagaaaaaaatctacaaatgcAACCTAGGATGCAGTAAAAGCAGCCACTACCATTGCTGCTGCTGCAAGAGGACTATAATCTCACGAAATTACTTCACCGAACATATACACAAGTGCGGGTTATCCATAAACGTGCAGGTGCACACACCTTGTAGTTCTTCACTGGTCCCCAGCACTTCAACAGCATTGTCTAGTCACTCTGCCCCACCAATCAACACCTCAGTCCCTATATGCAGTGCCATTAATGGCTCAGAACGTCAGTGCAGTGAAGACAGTGCCACGGGGAGCCCGAATCTCCTTGACATTAAAGTCAAGTCACCCAGTCCTCCATCTTCACCTGCTTCTTTGACTGCCACAGTTACACCCTCTGACAGCCAGGATATTCTTATGTCTGTGAACCCAACCCACAATATCTGTGCTGGTAGTCTCAAAGTACTGACATCAAGGCCCAAACGAATCACGTGTTGCTTCTGCAATTTAATTCTGaacaagaaaaacatcaaaGTACACATTCAAAGACGACACATGTCGGCTAATCCAGACTTGCTGCAAACGAATGGACTAAGCCATACACACATTGCCTCTGGCAACATGGAGGACCTGGTAGCAGAAGGCATTACACTCAAGATGCTTAATGATGCTTGGCAGACGGTCATGAGCAGCCCTTTGGGAGTGATCAAAACACCCATGATCCTCTGGAGCCAGACCACACTGCCACTCCATGTGCCCTGTAACGCCTATCTGAAGTTGGAGAACATGCAGAGGACGgGGTCATTTAAGATTAGAGGTGTAGCAAATCAGTTTGCCCGAAGAGCCAGTGGGGGTAATTTTGTCACATTGTCTGCTGGGAATTATGGGAAGTCCTTTGCCTATGCCTCTAAACACTACGGAACTAAAGGCAAAGTGGTGATGCCTGAAACAGCTCCCATCTCCAGATCTCTGCTAATACAAAGTTTTGGCATCGAGGTTGAACGAGTGCCAACCCAGAGTCTTATGGAAGTTGTCAATCGATGTgttcaaaaggaaaaaatgacttTACTTCATTCCTACAATGATCTGGATCTCATAGCAGGACATGCCAGTCTGGGGTTTGAGATCCTGGAGGTGCTTCCTAATCCTGATGTGGTAGTAGTGTGCTGCGGTGGAGGGGGTTTACTGGCTGGAGTAGCAGCAGTGATTAAGCTTTCAGGTTGTGAGGACACAAGAATTTATGGAGTGGAACCAGAAGGAGCATGCACCATGTACAAAAGCTTCATTGAGAAAAAACCTGTTGGCATGGACAGCAAAAGCATCGCCTCTGGTCTTGCACCACCATCTGCAGGTGCCCTGCCATATGCGATGTGTCAGAAGTATGTGGACGAGATAGTGTTGGTGACTGATGATGAAATCAAGTCTGCCGTTTCTGCTCTCTACAAAGCCGGTCTAGTTGTGGAACCCTCAGGATCCGCTGCCTTTGCTGCCCTCGTTAACAACAGAATACCAGACATTACTGGCAGGACCGTTGTGGTAATCCTGAGTGGAGGGAACATCAGCAAAGAAGAGCTTACCAGCTTCCCggactgatttacacaatacCTCTGTCTTTGATTAGCTTAATGTATTACCTGTTGAGACTTTTAAAGATTTTTGAGGAGTGGATGAAGACTTACCTGACAGAGCCAAATCAACATCATTATTTTTCATACatggaaaacactaaaatcaaATTAGTTGGttgcataataaaataaacaaagtggTTATACCAAATTTCTGagtttatggttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335461 lncRNA downstream 32583 15517224 ~ 15521690 (-) True G283081
TU335389 lncRNA downstream 164172 15387948 ~ 15390101 (-) True G283022
TU335356 lncRNA downstream 200832 15350706 ~ 15353441 (-) True G282999
TU335298 lncRNA downstream 283073 15270994 ~ 15271200 (-) True G282950
XR_003403332.2 lncRNA downstream 341018 15209348 ~ 15213255 (-) True LOC113532334
TU335610 lncRNA upstream 190601 15754317 ~ 15754605 (-) True G283218
TU335704 lncRNA upstream 478646 16042362 ~ 16042579 (-) True G283307
XR_004579867.1 lncRNA upstream 515052 16078768 ~ 16082121 (-) True LOC117599449
TU335902 lncRNA upstream 675799 16239515 ~ 16239901 (-) True G283503
XR_003403336.2 lncRNA upstream 731164 16294880 ~ 16296190 (-) True LOC113532372
XM_026923726.2 mRNA downstream 9390 15539057 ~ 15544883 (-) True alg10
XM_034313283.1 mRNA downstream 217340 15325373 ~ 15336933 (-) False LOC113532250
XM_034313284.1 mRNA downstream 220437 15325373 ~ 15333836 (-) False LOC113532250
XM_026923541.2 mRNA downstream 220462 15325373 ~ 15333811 (-) True LOC113532250
XM_034313258.1 mRNA downstream 290880 15236542 ~ 15263393 (-) False LOC113532267
XM_034313186.1 mRNA upstream 192590 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA upstream 192590 15756306 ~ 15778942 (-) True cerk
XM_034313343.1 mRNA upstream 805953 16369669 ~ 16389481 (-) True brd1a
XM_034313344.1 mRNA upstream 837491 16401207 ~ 16406863 (-) True alg12
XM_026922599.2 mRNA upstream 886070 16449786 ~ 16452939 (-) True LOC113531729
TU335292 other downstream 376660 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 2973210 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3893946 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3966249 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 4294881 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 1394808 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1539849 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2415069 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2415069 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 2507031 18070747 ~ 18082361 (-) False tmem209

Expression Profile