RNA id: XM_026923839.2


Basic Information

Item Value
RNA id XM_026923839.2
length 4563
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC113532419
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10941118 ~ 10974696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAAGGTAGGCCGACAAAGTGACGTCAGGCGCACGAAACACACCCTAGACGGTGAGGCAGAGATTCTCTGAGGATAAATAGCAGCCTGAAGTCGGAGTACCTGTGTTTCCAAACCGCCCATGCGCGcgaatgtttataataataatcgcCCTGCTCTGCGACGCTGCAaacgttttttttctcctctgacGTGTGTAAACGCGAGCCGCTGCGTTCTCGTGCCGTGAAGGTGATGTTGTCGCGTGCGTGTTTAATCCACTGGCTCGTGCTGCAGCTGTGGTGCTGTGGGTCGCGCGCGCGAACGGGCGGCTGTCCGGTCCAGTGTACCTGCGAGCAGgatggtgtgtatgtgagagtggAGTGTGCCGACCGAGGACTCACCTCACTGCCGGAGTCTCTCAGCGTTTACACCAGTTacctTGATCTGAGCATGAACAACATTAGTCAGCTGCCCAGCAATGCTTTCACCACGCTTCACTTTCTGGAGGAGCTGCGTCTAGCAGGAAATGATTTGACGGACATTCCTAAAGGAGCATTTGATGGCCTCATCAATCTCAAAACTCTAATGCTCCAAAACAACCAGCTTCAGGAGGTCCCCAGAGAGGCCTTTAAGAGCCTGCAGAACCTTCATTCCCTACGATTAGATGCAAACCACATCTCGAGAGTGCCACAAGGCTGTTTTGATGGACTGTCCTCTTTGCGCCACTTGTGGCTGGATGACAACGCTCTGACAGAGGTACCTGTTGATGCCCTGCGTACCCTCTCCTCCCTGCAGGCTATGACCTTCGCCCTCAACAAGATCACCCACATCCCAGATCGAGCATTTGCCAATCTTTCAAATCTGGTGGTTCTGCATCTCAATAACAACAGAGTGCTGTCCCTGGGAAAACAGAGCTTTGATGGGCTACAGAGCCTGGAGACTTTGGATTTGAACTACAACAGTCTGGAGGAGTTTCCCATCGCTATCAGAACCTTAAAGACTTTAAAGGAGTTGGGCTTTCACAACAACAAGATCAAGTCCATCCCTGAGCACGCCTTCATTGGAAACCCCTCTCTCTTAACAATATTCTTCTATGACAACCCCATTCAATTTGTTGGTCAGTCTGCTTTCCAGCACTTGCCAGAGCTCAGAACGCTGTCTTTAAATGGAGCAGCAGATATCACGCAGTTCCCAGATCTCACAGGCACACATAGTCTGGAGAGGCTTGCTATCACAGGTGCGAGAATCACATCTCTACCTAGCACAGTGTGTGAGCAGCTTCCCAACCTGCAGATGCTAGATCTTTCATACAACCTAATCCAATCCCTGCCCAGTCTCCAAGGCTGCAAAAAGATTCAAAAGATTGATCTCCATCATAACCAGATCCATGAGCTGCGAGCAGACACATTTCGAGGTTTGCCTTTACTCAAGTCCCTTGGCCTGGCCTGGAATAAGCTGTGCTCTGTGGATCCACTCTCCTTCTCTGAGCTGCCAGCTCTCACCAAACTTGACCTGACTTCCAATCACCTCTCATCTTTACCTGTGGTTGAGATGCATTTGTTGACTCACCTGAAACTGGCTGGTAATGTAGACCTCCAAGAGTTAATTCCGGTGGAGAGATTCCCCAGACTAAGGGTCATGGAGATGCCGTATGCGTTTCAGTGCTGTGCCTTTCTGACTTGTGAGAAACACGCGATCGGGTGGGAAAAAGGGAAGAACAGCAGCAATGATGTGGGAAGGAAAGAGAGTGTTGCCTCCAACCCAGGAGACCATGAATTTGAGGATCTTTTCCCAGACCTTGAAGATGACACTGTATCACACCACTCAGTCCAGTGCTCCCCAACACCAGGCCCATTCCAGCCATGTCTTCATCTGTTTGAGAGCTGGCTCGTGCGCTGTGGAGTTTGGATCATTGCCATCGTGTCCCTGGTTGGTAACGCCATGGTCATGGtgtccatctttctctctccaacATTTTTGTCTCCCGTGAAGCTGCTGGTGGGCTTGCTAGCGCTGGTCAACAGCCTGACAGGACTATGCAGTGGAGTTATGGCTCTTGTAGATGCCCTCACCTTTGGTAGCTTTGCTAAGTATGGCGCTAACTGGGAAAGCAGTACAAGCTGTAAGCTCACCGGCTTCGTGTCTGTTTTTGCATCAGAAACAAGCATTTTTCTCTTGACTGTGGCTGCTGTGGAAAGAAGTTTTTCTGTGCATAACGGCAAAGCGGCATTGGATTGTAGAGCACCAAAAACAATGGTTAAGCTAGCAGTGCCACTTTGCTTCATCTTGGGCTTGGCTGTAACATCAGTACCTCTCCTACATGTTGGTGAATACAGCATATCATCACTCtgccttcctcttcctcttggAGAACACGCTGGTTTGGGCTTGATGGTGGTTCAAGTACTGGTCAACTCTCTGTGCTACCTCATCATGACTGTCACCTACATGTGTCTGTACTGCAGTTTAGAGAAAGGGGAACACGACAAGCTCTGGGACTGCTCCATGATCCGTCATGTGGCCTGGCTTCTTTTCGCAAATTGTGTCCTCTACTTCCCTGTAGCATTCCTGTCCTTTTCTGCCCTGCTGAAAATCTCCGCCGTGGGCCCGTACGTTGTCAAATCAGTGCTTCTGGTGGTTGTACCCTTGCCTGCATGCCTTAACCCCTTGCTTTATGCACTCTTCAACCCCCATTTCAAAGAGGACCTGGGACTCCTGCTCAGACAGACTCGGGTGACCCTGCTGAGAAACCAGCACCTGAGCCTGGCCTCACTCGACTCAGACGATGCCGAAAAGCAGTCCTGTGACTCCACGCAAGCTCTGGTCTCTTTCACCAGTTTAAACAAACAACCAACATGTTTGGCACAGAATACCAAGCCCCATCATCGCgccatgcactgtgtgtgtacgTCTTAAAGTTGAGTGTCGGCTAAAATGCAAGACTTTCTTTAATTGACCTATTAATGATTTTCCACACAGCCCGGCGTGTAAGACAAACCCAGTCAACGTTACATGGATTAGTGTGAAAGCATCAGTGTGTTTCAACTGCACATAGACAAGCCTTCAGTAACACTGCGTGTGTGTTGGTCGAGTGTACGTGAGGGGAATACTGATGTCTTATGCTTTGTCCAGACTTGGTGGCAGGGTCTTAACCTGCATTTAACTGTCAAATGGTAAAATCCCTGACTATTTAGCTGTCAAGTGTCCTGCGTACAAAGGAGAAGCCTAACAgcagtaagattttttttttttttttcactattttctgGGCTTGTGGACATTTCCATATTTTGTGTACCTTAAGTAATCAGAAAGCAAATTTGTCTGTAAATTCCCAGACAagtattttgcacatttcttgctcacacacacacactacattggCTTCTCCTGGGTTTGTGGAaatgtctctctccctgtatgCAGAGTACATTGTAAATACATGGTAATGTTTGGCAAAACTTGATAGCTTAATAAGACAGTTACGTTATATAACATTATACGATCTTAGTCATATTGAAGACGCCAGGTCAATATGTGttgtttcatgttttacttTTTGACCTATGCAAAGgttaaagtattaaatatttatctaaaTGTGATGATGAAGCTTCACTATTAATAGACAAGAATATAACATTCAACCAGCTACTCACACTTACAAACCTGTATAGAGgacacagtgttgtgtagctcttAATTAGTGTGGTAATGTTACATGCTTGCTGTTGAATGTGTTGCAGAAACAGTTGCATGAAACATTTCAGATAATTAATGAAGATTTAAGTAACTTTTAGTTGTTATAATAtgcatttgatttttaataGCACTTGTTTAGTACTTGACATCCCCAGTAATAATTAGATTAATGCATTCATCATACATTGTCCTgctttatatgtatgtatgtaacttTAAGTGTAGAAATATTCATAGCAAGGCTTCTATCAGAATCAATTTACAAGTTTATAAAGACATTGGATCTATAGATTGCTACTTCAGTATCTATGTTaatgtttcatatttaaatagCTGATATATTTTTGAgacatcattttcatttcagtttaaacaTGGACACTTTGAGCATTTCTAGTTATGACAAATTAGTACACAACACACCATGATTTGATGTCATTATGTAGTTAAAGTATCCcactttaacatttaacatgatGAATCAGCTAAATGCTTCcaggtaaatataaaatataaggaACAACTagaagatgtttattaaaacagaaaataaaccacTGAATGAACATTACGTGTTCAAGCTGATCcaaatatattaacataattattttttctaataTACCGAGCAAAACCTTTGTATGAACCTGAACAATTGCGAAAGATAAATCTAAAAATGTAGAGTTAGTAACTGTGATGATGTGTTGTGTAAAGAAGAGCTGTGAATCTAGAGATATTAGCAGCTATTCTTCACCACTGAAGTGTACGTTCTCATGTCtgtatatagaatgtctttttttataacTCGGATATGTCATTTGTATGTCATATGTAATTTGTATTAAAGACAAAttacaaatgtaatgtaatttgtaTTGATATG

Function

GO: NA

KEGG:

id description
K04308 LGR5, GPR49; leucine-rich repeat-containing G protein-coupled receptor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 10138 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 32488 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 156825 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 163221 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 470743 10468686 ~ 10470375 (-) True G280360
TU332738 lncRNA upstream 104472 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 195190 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 205235 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 208370 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 285095 11259791 ~ 11259991 (-) True G280841
XM_026922686.2 mRNA downstream 1016 10931347 ~ 10940102 (-) True tmem19
XM_034313018.1 mRNA downstream 1771 10931347 ~ 10939347 (-) False tmem19
XM_026923328.2 mRNA downstream 12702 10913634 ~ 10928416 (-) True rab21
XM_026923233.2 mRNA downstream 86534 10830886 ~ 10854584 (-) False ptprr
XM_034313264.1 mRNA upstream 25313 11000009 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923253.2 mRNA upstream 27469 11002165 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923252.2 mRNA upstream 27469 11002165 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923658.2 mRNA upstream 33646 11008342 ~ 11009632 (-) True msgn1
XM_026922739.2 mRNA upstream 37523 11012219 ~ 11028405 (-) False LOC113531821
TU332243 other downstream 644997 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1318499 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1732555 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2131780 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2721438 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 20409 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 264239 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 611608 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 683194 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1606227 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile