RNA id: XM_026923849.2


Basic Information

Item Value
RNA id XM_026923849.2
length 3928
RNA type mRNA
GC content 0.46
exon number 19
gene id mcm10
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19314613 ~ 19335240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAAATGACGTGTTTGTGAGGGTCCTCGCGGGTTTTAACGGTTTTCGCGCCACCACAGAACAGAGCAGCGCCGAGTAACTATCCTGCTTCGTATTAAATACTTTTGAGGAATTATTTTAGTGAATATGCTCACACGTTGTGTTCGCTATAAGTTGTAGAAAGATGTTGATATAATCGGTGTCAGCTTAATTTTACACGTTATATTGAACACTTAGACTGTTTACTTAAGTTGTTTAATCCTTGGCTGGCTACCTACCTACCTAATACTcatactaactaactaactaactaactaatactcatactaactaactaactaatacTCCTACTAAATAACCAATACTCCTACTAACTAACTAATATTCCTATCTACCTAACTAGCTCTCCTACTAACTAACTAATTCTCCTAGCTACCTAATACTCCTGCCTAACTAACTAATACTCCTATCACCTAACTAGCTTTCCTACTATCTAATACCTCTATCTACCTAACTAATACTCCTGCCTACCCAATACTCCTACTAACTAACACTCATATCTACCTAACTAGCTCTCCTAATAACTAGCTAACTCTCCTACTATCTAACTCTTCTGATAACTTACTAATACTCATACTACCTAACTAATAATCCTATCTACCTAACTAACTCTCCTGCCTAACTAACTAATACTCCTACTAACTAAGTCGTCCACTGATTTAAAGAAGCACCGCAGTTCTTGATTTACTGGAGGAGAAGGCTGGTGTGATGACGGCCGAGGACGAAAACCTGGACATGCTGCTCTCCTTATTTGAGGAGAGTCAGGATCAGGATCCAGGGAATTCCTCTTCCAGAGAAGCAGAAGATAACCTGGATGGtctgtttgatgatgatgatgatgatgatgatgaagatggtgaagGTTATGCGGAGCCggaggaggacgaggacgaGGATGCGCCGTTGGAGAACTCGGGCACGGGAGCAGAAAGTGAGCACAGCAGATCCAGACAGGACCTGGAAGCTGAGCTGAGGAACATGCAAGAGAAGATGCAAAAGCTACAGCAGCAGCTGGAGGCATCACAAAAGTGTGCGGATGTCTCCCGGTCCAAACATACAGAAGACAACACTTCCTCACAAAGGCAGACAAGCACCAAGTGTTCACCAGCAACCCAGCAGAGCAGCAGGACTCTGACTTCACCTCAGCAGAGCAGCAGGACTCTGACTTCACCTCAGCAGAGCAGCAGGACTCTGACTTCACCTCAGCAGAGCAGCAGGACTCTGACTTCACCTCAGCAGAGCAGCAGACCAATCAAAGCAAATCAGAGCAGCAAGACACCCCAGAGAGCATCTACAGTGTTTTCCTCTCCCCAGTTCTCAGCAACAGAGCTGACTGAGAAAGTGCAGAACAAGCAGAGGAGTGCACACCAACCCAAAGCAGcctCCCCAGAAAACCGGAATGTTTTGGGTAAGAGTGTGAATGACAAGTTGTCACAGCCAATGAGAAGTAGCAGTACAGTCAACAACACAATGAAGTCACCACCAGCAAGCAAAAGTGCTGATGTGGCCCCTCCCATTGCAAGACAGGCCACACCCCGACCATCTGTCACTCAGGATGTTACGGTGGAGAAATTCTCAGGTCTCAGGCTtagGAGACCTCGGCTGTCCTCAGTAGAAATCGAACACAAAATGGCTAACCGCAGAATGATCCGGCTTTCACAGCTGCCCGATCGACTGGCTCTGGAAAATCTAGAGGACAGTGACTGGGTCACCTTTGCCGtgctgataaataaaatcaccCCACAAAGCAAGAATAATGGGAAAACCTTCAGTATCTGGAAGCTGAATGACCTTCATAACCTAGATGTGAATGTATCGCTCTTCCTCTTTGGGACTGTTCACGCAGACTTGTGGAAGACTGATACTGGGACAGTGATTGGTATACTCAACCCCAAtcaaatgaagaacaaagatgGCTCCAGTGAGCTTTGCCTCACAGTTGACCATCCACAGAAGGTTCTGATGTTGGGAGAAGCCATGGATTTTGGTACTTGCAAGGCCAAAAAGAAAAACGGAGATTCCTGCACACAGCTAGTCAACTTGTATGAATGCCAGTACTGCCAATACCACGTTAAAGCACAATACAAGAAAATGAGCTCAAAGAGGGCTGAGCTTCAGTCCAGTTACACAGGCACTGCCCCTCGTAAAGGAAAAGGCCGTGGAAGTTTAAGAGAACGCCTGTGCCAGAGTGACTTCCACTACGGGGGGCTGTCGTCACTTGCGTGTGCGCCGTCAATGACTGCCCCACAGCCTAAGAAACAGCCCTCAATTCAGGCAGTTTTGGCTTCCATCCCTAATAAGAATCTCGCCATTAGTTCAGGTGAGGTGATGGGATGTTCTGATGACTTCAGAAGCTTAATGTCCATGCCTACACCAGGAGCACTAAATATTAAGAAACACCTAGGACAAACTAAGACAAAAGAACTTCCCGGATCGTCGGTTCAGTCCATCTCTGCGGCTGAGCTCCTCAAGCAACAGAAAACACTTCACCAGCAAAGGTTTCAGGCCAGGCAGAAGAGGGCAGAGGCAATTCagaagagGGTTCTGCAAAACACAGGAGGTGCTGTGATTCCAGATAGACCTTCCATAAACAGGGCAGTTCTGCCTTCACAGAAAGCAGCTTCAGAGGTTCCCAAAGGCTCCTCTCCACCTAAACCTGGCCTCTCCACCTCTCCTGTACCCACCTTAGGACGAGGCTACACAGAGGGAGACGATATTCTACTGGACATGTCGCCTCCTCCATGCTCAAAAAGCATCTCGGCTGCAAAACTGGCTGCAGTCAAAAAGCTCCAAGCCAAAGGAGTGTCACTTGTTAAAAATGACCCTAACGCTGTGAAACGCAAGCGACCCAACAGCAATGACATCACAGCCCGAGTGGAGCTCAGCCTAGCCTCACCTGAAGGGGAGAATAGAGCAGAGCAGGAGGCGGAGGAGCCAGCTCAGAAGAAGAGGCGTGAGCAGCTAGATTATATCCAGTCTGAGGAGTTTCAGCGCATTCTGAATGCCAAGTCTACAAATTCCTGGATAATAGGGGAgGTGGAGGAGAAGGCCATGCAGGATTACTTTGAGCCACTAGTACAGAAAGAGAAGTTGGAAGAGAAGATGAAGAGCATCAGGGAGATGAAGTGTCGAGCAGTCACTTGTAAAACTTGTAAGTACACACACTTCAAACCAGCTGAGCGCTGTGTAGAGGAGAAGCACGATTACCACTGGCATGATGCTGTCAAGCGTTTCTTCAAATGCCCTTGTGGCCAGAGGAAGATCAGCCTGAGCCGCTTCCCCACTCTAGCCTGCAGCAACTGTGGTGTGTTCAAGTGGGAGAGAGACGGCATGTTAAAGGAAAAGAATGGACCAAAAATTGGAGGCGagctgctgctgccacgtgGTGAAGAACACTCCAAGTTCCTCAATAGTCTGAAATAAAGCCAGCAGACTTCCTGCTATCTGACTCCGTCCCCCAGCACTcctcctctcacacactgctCAGGGAGTCTTTATATTACAGTGCACAATGATGAAACTGGAAGCCTCTTCATTTTCCCTGAGCCAGGCCGAGACTGAAGTGCTGTTAATTTACAGCTTTTCGTATCAGCGCACAAAGTTTAAATGCAGTACTAATGTAAATTGTTGCAACTGATTTGCAGCAGCTCTAATCTCAAGTTGGTTAGTGCCAACTGTTTGTCTtggtctttttgtgtgtgtgtctgtgtatgtctgtgtctgtgtgtttttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgggttatgtattttataatgtgatgtatattttaaagcatttttctaGTTTCACTTCTGAATCATGTGTGGCTGTGATATAGTGCTTAAATTAAACTAGCTTGAGTACTCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337873 lncRNA downstream 23807 19288591 ~ 19290806 (-) True G285245
TU337468 lncRNA downstream 376518 18868057 ~ 18938095 (-) False G284885
TU337467 lncRNA downstream 376518 18934868 ~ 18938095 (-) True G284885
TU337489 lncRNA downstream 391716 18918456 ~ 18922897 (-) False LOC117599567
XR_004579967.1 lncRNA downstream 391743 18918396 ~ 18922870 (-) True LOC117599567
TU337891 lncRNA upstream 21320 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 21734 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 34087 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 69839 19405079 ~ 19405317 (-) True G285287
TU337929 lncRNA upstream 70663 19405903 ~ 19406128 (-) True G285288
XM_026922764.2 mRNA downstream 30114 19283150 ~ 19284499 (-) True LOC113531838
XM_034313291.1 mRNA downstream 41919 19271595 ~ 19272694 (-) True LOC117599574
XM_034313076.1 mRNA downstream 52569 19260713 ~ 19262044 (-) True LOC117599464
XM_034313075.1 mRNA downstream 60416 19252823 ~ 19254197 (-) True LOC117599463
XM_026923684.2 mRNA downstream 67250 19190496 ~ 19247363 (-) True cdk17
XM_026923246.2 mRNA upstream 421 19335661 ~ 19355138 (-) False pparaa
XM_034313316.1 mRNA upstream 421 19335661 ~ 19354998 (-) False pparaa
XM_026923247.2 mRNA upstream 421 19335661 ~ 19352448 (-) False pparaa
XM_026923248.2 mRNA upstream 421 19335661 ~ 19352301 (-) False pparaa
XM_034313315.1 mRNA upstream 421 19335661 ~ 19350660 (-) False pparaa
trnae-cuc_38 other downstream 1102220 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1126615 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1222069 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1223991 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1230759 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 977827 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1087161 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2125586 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2125586 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2125587 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile