RNA id: XM_026928102.2


Basic Information

Item Value
RNA id XM_026928102.2
length 1961
RNA type mRNA
GC content 0.49
exon number 15
gene id cmah
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 131691 ~ 164741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacaagcgagTGCAGTTCTACAATTCTTACGCTGTCCTCATTAAGATGTGTCAGGTGTCTCAGGTGGTGTTGAAGCTGGATGCTGCAGAGGCTCAGGGCCTGAAACACAGAATCAActtcaagaaaaataaagatggaAAATGTTTCATCATCTACAAAGATAAAGACGTGATACGAGCCTGCAGGAACCAGTGCAAACACCAAGGAGGATTATTCACCCAGGACATGGAGGACATGGacggcagGACAGTTCGCTGCTCTAAACATTTCTGGAAGCTGAACGTGGCGACCATGGAGTACATCAATCCTCCAGATAGCTTCATACAGGACAAACTCGaggtggtACGTTGTGAAGACGGGGGATTGGAGTTTGTGGAGTTGGACCCTCCTGACCCTTGGACAGCTGATCCCAGACCTGCTGAGGAGCTACAGCCTGGAGAGGTtacgctGACTTACATCACACACGCATGTGTGGAAGTGAAGGCGGGGTCGAAGAGGATGATGTTTGATCCGTGGTTGGTGGGTCCAGCATTCGCTCGGGGTTGGTGGCTTTTACACGAACCTCCACCTGATGCACTGGAGAGACTCTACACTGCAGATCTGATCTACATCAGCCACATGCACTCAGACCACCTCAGCTATCCCACTCTGAAGTTACTCGCTGAGAGAAGATCAGATTTACCAATATACGTTGGAAACACAGAACGTCCCGTTTTCTGGTATCTCGAGAAAAGCGGCGTGAATCTGACTAACATCAACGTTGTTCCATTTGGCATCTGGCAGAACGTAGATGAACATTTGCGGTTTATGATCCTGATGGACGGCGTTCACCCGGAGATGGACACCTGCATTATTGTGGAATATAAAgGTCACAAGATCCTGAACACAGTGGACTGTACAAGCCCCAATAATGGCCGCCTCCCGAACGGAGTGGACGTGATGCTGAGCGACTTCGCTGGAGGAGCTTCAGGATTCCCCATGACTTTCACTGGAGGAAAATACACTGAGAGCTGGAAGGTAAATTTTATCAAAACTGAGAGGAGGAAGCTGTTGAACTATAAAGCTCAGCTGGTGAAGTCCCTGCGGCCGAAAGTGTACAGTCCGATCGCTGGCTACTTCACAGAGGCTCATCCATCTGACagGTACATAAAGGAGACGAACAAGAAGAATGACCCTGTGGAACTGAACAGACTGATAAATCGAACGTGTCCTGAGATTTTCACCTGGACTCCTGTACCAGGGGCCGTCCTGGACCTGTGTCTCGCTCTCACTCAaagGGACGCAGTCACCGAGCCTCCGAGTGGGATGAAGATCTTTAAGGATAGCTGGGACTTTAATGTTTATTTGGACGAACTGAACACTGCGGTCTCGTCCCAAATCTTCAAACACAAACGTTGGATAGCATTTTACTATCAGTGGGCCGCTTTTCGAAACTACAACCTGGTCATACGGGTGATAGAGACAGACGATGAGTTCCAGCCGCTGAAGGACGGATACGATTACCTGGTGGACTTTCTAGATCTTTCTTTCCCCTTATCGAGACCAGACAGAGAGCACTCCTACTTAGAGgttaaGAACAGAGTGAATGTGATGAGATACGTGGTGTTGCATGGCCTGCTGTGGGACGATCTGTACATCGGCTTCAGCAACCAAATCAGCCGAGATCCAGACATCTACCATCACaaGTTTTGGAAACACTTTCAGTCAGATTTGCCCACATCGCCACCGGATTGGGACTCTTTCCTAAAAACGGTTCCTGCTCAGGATTCTGATCAGTACCCCTGCGTTCTGTCTTATGTTATTGTCGGTGGTTTGATCGGTCTTGTTTGCTTTTCCCCtcccttgttttttttggcGTCACGCTCTCTACGAGATCTCTATGAGTGTGTATGcacgctctttctctctctcggttTCTCTTAGGTGGATGTGCCTGTTTGTTTTGA

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0046381 CMP-N-acetylneuraminate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0030338 CMP-N-acetylneuraminate monooxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325837 lncRNA downstream 48443 82623 ~ 83248 (-) True G274968
TU325769 lncRNA downstream 97994 31803 ~ 33697 (-) True G274918
TU325856 lncRNA upstream 3863 168604 ~ 174698 (-) True G274982
TU325915 lncRNA upstream 82582 247323 ~ 280961 (-) True G275028
TU325917 lncRNA upstream 85930 250671 ~ 285231 (-) True G275029
TU325909 lncRNA upstream 121074 285815 ~ 287024 (-) False LOC113535352
TU325911 lncRNA upstream 126909 291650 ~ 292596 (-) True G275024
XM_026928570.2 mRNA downstream 23854 89473 ~ 107837 (-) True zdhhc17
XM_034313235.1 mRNA downstream 81654 14021 ~ 50037 (-) False osbpl8
XM_034313037.1 mRNA upstream 83595 248336 ~ 253845 (-) True LOC117599453
XM_034313069.1 mRNA upstream 116693 281434 ~ 287052 (-) True LOC113535352
XM_034312957.1 mRNA upstream 190233 354974 ~ 369037 (-) True LOC113531599
XM_034312958.1 mRNA upstream 211716 376457 ~ 394253 (-) True LOC117599422
XM_034313101.1 mRNA upstream 239220 403961 ~ 557687 (-) False LOC113531866
TU325907 other upstream 86884 251625 ~ 253817 (-) False LOC117599453
TU325948 other upstream 200348 365089 ~ 369034 (-) False LOC113531599
TU326084 other upstream 371705 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 418457 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 432673 597414 ~ 601029 (-) True LOC117599533

Expression Profile