RNA id: XM_034313207.1


Basic Information

Item Value
RNA id XM_034313207.1
length 4166
RNA type mRNA
GC content 0.52
exon number 29
gene id plekha5
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21983016 ~ 22089419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGGACGCGCGCGGCTCGTGCACGGTGCTGCTGGCTGCTCCTCggttgtagtgtagtgtagtgtagacaTGGCGGCGGATCTAAACCCCGACTGGCTCTCTTGCTTACCTTCTTCTTGGAGTTATGGGGTGATCCAGGACGGGAGAGTGTTCTTCATCAACGAAGAAGCAAAGAGTACGACTTGGCTTCATCCTGTCACTGGTGAAGCGGTGATTACAGGGCACAGGAAAACTCCAGATTTACCAACTGGATGGGAGGAAGGATATACGTTCGAGGGAGCGCGCTGCTTTAtcaaTCACAATGAGCGGAAAGTGACCTGCAAACATCCGGTCTCTGGTGCACCATCACAAGACAACTGCATCTTTGTCGTCAACGAACAGCCAGCAGCTAAAGCACCAGCTACTGAGAAGAAGGAACGACCCACGAGCATCATGAGTGAGGCATCCAACTACACGGGAGGCTCAGACTACATGACACACCCAAGCAGTCCAACAACCAGACAATCAAGGTCATCTAAAAAAGTCCACAATTTTGGCAAGCGGTCACACTCCATAAAGAGAAACCCAAATGCTCCAGTAGTCAAGCGCAGCTGGCTTTATAAACAGGACAGCACAGGAATGAAGATGTGGAAGAAGAGGTGGTTTGTGTTGTCTGACATGTGCCTCTTCTACTATAAAGatgaaaaggaagaaggaatcCTTGGGAGCATCCTTTTACCGAGCTTCCATATCTCTCTGTTATCTGTGGATGACCACATAAGCAAGAAATACGCCTTCAAGGCCACACACCCAAACATGCGGACATACTACTTTTGCACTGACACAGCCAAAGAAATGGAGTCTTGGATAAAAGTGATGACCGATGCTACACTTGTCCACACTGAGCCAATCAAAAGactggaaaatgtaaagGTAGATTCACGCAGCCCACTGGAGATGAACAACATGTTAAATCACTGGGTTCTGACTCAACCTGAGATCCAGAATAATGAGAGGAACCGTGAGAGTCTTCACCTTGAGGACAAAAAGCAGAAACAGCTGGAGAAACAGCCCAGGAtccacagagagaaagaacgaTGTGCCGTTCAGAAAGACTCAGAAAAGTACCAAGTTCAAAAGGAAGGTGAAAAGTTTGCTCTAGAGAAAGATGGACAGAAGTATCCTCTTCAGAAGAGTGGCTATAGATACATGCTACAGAAAGATGTGGAAACATTTGGTGtacagaaagatggagaaaagTATGCCTCTACTCTGCAGAAGGATAGTAAACGGCATGCCCTCCAGAGAGATGAAGAAATAAATCTGCtgcaaaaagaaatgcaaagatACACTCTGCACAAAGACAGTGACAAGCATGTGCTTCCAAAGGACAATGAGATACATAGTGTGCACAAAGACGGTGAGAAATATCTCCAGAAAGATGGAGGACGACCTACACAGAAGACCACAGTGCAGAAAGAAGCAGAGAGGTCCAGGCTTCAGCGAGAAGACGAGAAGTACAGCTTGCAGAAGGATGGGAATGTGGAGCAGCCCCTCTCCAAAGTGGACAGCGTCAAGCTGCAGCCTGTGCAGGCAGCCACCGACGTCCCGGCTGTGTCTCCATCATGGCAGCTGCAGAGCAGAGGAGGCTCAGCTCAGTATAAAGCTACACAAGTGAATGGCTCAGGAGGAGAGCAGAGCCCAGGAGAAATGGGTAACTCCATTCCACAAAGGACAGCCGTACAGCCTCAGCAGCCTGCAGAGCCAGAGCGGAGCTTAAGCAGGTCTAACTCCATTCAGCTGGAGCAGTATTTTAGGACACACCGCACCAAGGTCCAGGACGACGACACTAAGAGCATCACTTCATATCAGACTCTGCCCAGGAACATGCCTAGCCATCGGACACAGGTGGTGCCGCGCTATCCCGAGGGGTACCGCACGCTTCCACGTAACATGCTGCGGCCGGACAGcatctgcagtgtggcaggttCGGTGTTCGACTGTGCGCTGCAGCCCGTGGCAGCAGAGAAGAGGCGCTCTATGCGAGATGACACTTTGTGGCAGCTGTATGAGTGGCAGCAGAGGCAGGCCTACAGCCGTATGGGCTACAGCACACTGCCCAGCCCCAAGACTCTGAGCCACATTGCCGAGTCCATCCCCTCATCGCCCTCGCACGGCTCCCTGGCTCTGTACCACTCCGTCTCCCCTAACCGGCCCTACAATCCCAGCACAATGTCTGAAGTTTCCTCACCTGTGTTCCGTGGAGATGTCAGCATTGACCGGCGCCACAGAGCACACCGTGCGAAGTATGCATACCCACCTGATTGCAGGGTCCCAGCAGCTCAGAGCATCACACCGCAGTCTCTGCAGGGTAAAACGCCAGAAGAGCTGACCCTGTTGCTTATCAAGCTGCGACGGCAGCAGGCTGAGCTCAACAGCATCCGAGAACAGACTCTCACTCAGCTAATGCAGCTAAACGTTGATGCCGCCAACCCGAAGAATAAGGTGCTTTCTCATCACCTGCAGAGGAATCTCATGTATCTGGACAGCCAGATGAAGCAGAATGAGCCTATAATCTTCATGATTCACACTATGATTGAGAGCTCGGCACCGAGGCCTCAACTATACCAGCAAATGAGTCCTGAGGCATACAGCGAGAGCATATATGGCTACAGACCTGAAGAACTGGATGTTGATACTAAGTTAAGCAGATTGTGTGAACAAGGCAAAGTGGTGCGGACACAAGAGGAGAAGCTTCAGCAGCTCCACAGAGAGAAGCACACCCTAGAAACAGCCCTTTTATCAGCGAGTCAGGAGCTTGAGATGAGCGCAGATAACCCAGTGGCTGTGCAGAGCCTCATGCAGCAGAGGGACGTACTGCAGAGCGGCCTTTTGAGCTCCTGCCGAGAACTATCCCGCGTCAGCACTGAGCTGGATAGAAGTTGGAAAGAGTACGATAAACTGGAGGCTGACGTGAGTTTGGCTAAGAGGAACCTGCTCGATCAGCTGGAGGTTCTCGGCAGTCCACAGACAGAACCCCCTAGTCAGCAGCATGTGCAGATTCAAAAGGAGCTGTGGAGGATTCAGGACGTGATGGATGCACTGAACAAAAATAAGCCAAAGAGAAATGCTGAGCCAAgcTTTCCACCTTCTGGTCTTCAGAAAAAGGAGGAGTCAGATTCAGTGCCCCCACGTCCTCCGCTTCCCCACCTTTATGAGGGCAGAGGGCGGCTGTGTGTGCCCCACCTGCCCAGCCCCAGCCAGCTTCACCCACCTCGCACAGGCCCTCACCAGCCCGAGGACCGCAAAGCCGCCCAGCGCAATGGCAGTCACAGCGGTCCAGACTACAGGCTGTATAAGAGTGAGCCGGAGCTGACAACAGTGGCTGAAGTAGACGAGAGCAATGGAGAGGACAAATCTGATCAGGCTGCTGAGAAGGAGCCCTCTAGTACGAAAGTGTCCTATCCTGTGGGAGTAGTGAGCTCAAGGACAAAGTCGCCTATGCCAGTGTCCTCCACTATTGCTTCTTATGTGACTTTGAGGAAGGCCAAGAAACCTGAACCAAAAACAAACCGTCCAAACAGTACAGTGGAGCACATTAGCAGCAGTGTAGAGGGAGTTCGTCAGCGCATGAGTGTCGAGGAGCAAATGGAGCGGATTCGGAGGCACCAGCAGGGTGCGCTgcgagagagaaggagggaagaCGGTTCTCTTTCCCGCAGTCTTTCCTTCACCAAAGACACCCCCTATTACTACACCCTGCAGatgagcACAAAAAGAAGGGAGATGTCAGGTGGAGACTCAAACCAGATCAGAGCCACTACGTTCAAAGAAAACTGCAAAGCAATGGAGGAGCTGGGGAAAGTGTCAGGGTCTGAGTTTGGTGAAAAGGTCTCTGTAGCCAGCAGAAGCCCAGAGCAGGGCAAACCCCTGGGCACTGAGGACAGTCTGCAGACTGCAGTGATGGTACGAGTGGACACAGAGGAAAATGATGACGACGAGGATCTCTCTGGACAAAGTCAAGATCGGATCATCAAGGACTCCTACAATCTGACGTCCTCCAAACACAGCACGACAGCTTCAGTGAACAGCCTTTCCAGTTCGCCTCAGTCTCCAagctcctctcctcttccttcCTCCCCTCCTCACCTCCCTGATGGTTCccacttcatgtgtgtgtagtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339429 lncRNA downstream 199377 21786152 ~ 21787372 (-) True G286613
XR_003404520.2 lncRNA downstream 334318 21651622 ~ 21652431 (-) True LOC113544611
XR_003404510.2 lncRNA downstream 388349 21584065 ~ 21598400 (-) True LOC113544500
TU339340 lncRNA downstream 412649 21573825 ~ 21574100 (-) True G286546
TU339096 lncRNA downstream 490130 21496377 ~ 21496619 (-) True G286337
TU339531 lncRNA upstream 8192 22097608 ~ 22097821 (-) True G286698
TU339533 lncRNA upstream 27181 22116597 ~ 22116953 (-) True G286700
XR_004579983.1 lncRNA upstream 58857 22148273 ~ 22149018 (-) True LOC113544512
TU339588 lncRNA upstream 99903 22189319 ~ 22235065 (-) True G286740
TU339673 lncRNA upstream 246488 22335904 ~ 22453567 (-) True G286810
XM_026943445.2 mRNA downstream 6427 21965132 ~ 21980322 (-) True aebp2
XM_026943468.2 mRNA downstream 54762 21860480 ~ 21931987 (-) False pde3a
XM_026943467.2 mRNA downstream 54762 21860480 ~ 21931987 (-) False pde3a
XM_026943466.2 mRNA downstream 54762 21860480 ~ 21931987 (-) True pde3a
XM_034313296.1 mRNA downstream 144314 21797091 ~ 21842435 (-) False slco1c1
XM_026943324.2 mRNA upstream 328689 22418105 ~ 22423754 (-) True lrrc4.1
XM_034313083.1 mRNA upstream 407973 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_034313084.1 mRNA upstream 407973 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_026943417.2 mRNA upstream 407973 22497389 ~ 22523790 (-) True si:dkey-159a18.1
XM_026943418.2 mRNA upstream 411699 22501115 ~ 22523790 (-) False si:dkey-159a18.1
XR_004579970.1 other downstream 515649 21460826 ~ 21471100 (-) False LOC113544587
XR_003404518.2 other downstream 515649 21460827 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other downstream 515693 21460826 ~ 21471056 (-) True LOC113544587
XR_004579972.1 other downstream 515694 21460827 ~ 21471055 (-) False LOC113544587
trnaa-ugc_16 other downstream 1564277 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU339722 other upstream 396820 22486236 ~ 22489467 (-) True G286852

Expression Profile