RNA id: XM_026943467.2


Basic Information

Item Value
RNA id XM_026943467.2
length 7480
RNA type mRNA
GC content 0.45
exon number 15
gene id pde3a
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21860480 ~ 21931987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttccactgcacatCTTTCGTTGACTGATGGCAGCGGGGGCAGAGTCAGACATCTGTAGAGGAATATCGAGAGCTGTGCACGAGAGTAACCCGCGCGCTGGGGAGCGCAGCGCCTATGTGAAAGCGTGTGTGTCCCCTCTGTATCAGGACAGCGGTTGCCAGTGGTTTTGTCCGAACGCAAGCTGGAGGTGTGGTAAACTGTCGTCTGCGGCGTGCGTCGGCTCCGTGTCGTTTTGTCTTGCCTTGCTGCTTAGATTTGTTGACTGGGATGTGGAGCCCAGCTCCAGCTGTAACAGTGCTCTCCAGGCTGACTCGGGATCTTCTTTCCTCTTCGTGAACAGAGGTGTGGTGGAGTTCTCCTTCGCCTTGTGGCATCTGATCGCACCTATTTTCACACTGGTGAGTGCCTTCTTCTGGGCCGGCCTTTACTTGATCCGCTGCGGAGTGCTGGACCGAACCATCGTCTTCCTGCTCACCCTGTGTCACTTGGGAGAAGCGGCGGCGCAGGCGTTCTTGCATGGCTCGGACGAGCAGCTGCACTCTCTGACGGCTAGCGTGGTGGTGCTCGGCTGCTTGGCAAGCGGGGCACTCATGGTGATGCGACTGGGCCAGGGCATCTCCGTCATCGtcttcatcagcatcatcagAGCCGCCTCGCTTATTTCTCTGCACAGAGTGCGCGCGAGCTGGAGACCCTACTTGGCGTACCTGGTGGGGGTCCTGGGCGTCCTGCTGGCGAGGTATGCTGACAGGCTGCTTCCGAATCAGGCAAGCCAACTGGAGGGCTGCACCTCCGTGACAGGGTCTAGAGAGGACCTTCTCGTGTTTAAAAGGCGCAGGAGATCCAGCTCCGTCGTATCTTCAGACATGGCACAGCACGGCTTCGAGGCCAGCAGCAAGTCGCACAGGAGAACCTCCCTGCCATGCATCCGGAAAGACCAGtcctCAGGCACCAGTGTTATGGTGGACATTGCAGTGATGGGTGAAGCCCATGGACTAATCTCAGACCTCCTAGCTGACCCATCACTGCCTCCCAACACCTGCAGCTCATTGAGAGCTGTTAGTAAACTGCTCAATACCCAACTCACATTTCAGCCCCTGCACCACCGGGCACGCATCAACCCTCTGCTGGTTTCCACCGATGGATACCCCTGCACTGACTTCGAGGAGGGTCTTGAGAAGAGTGATAGACTGGCTATCCCTAAGCACCGTTTGCGACGGAGTTTGCCTTCTGGGCCTCTTCGGCGCATTTCCTCTTCCTGGACAACTACCACCTCTGCCACAGGGCTTCCCACCATTGAGCCAAGCCTGGTCAGGCGAGACCACAattccaccatcaacaaacccgTTCATGACAATCCCTCCTGCAGGTCCATGTCTGCTTCCCACATCACCTCAGCCCCCAACTACCTCTACAACAAAGTCAGGCAAGGTTACCATCCCTTCAGCAACTCACCAATGGCCTCACCTTGCCACTCGCCTCCAGTCCAGGGAACCTCAGTGAACAGCCCCACCAGTAAGGTGCCCTCAATGGACCTGCCCGATTCTGGGGCCCTTCAGGGCAATTACCTCTCACCAGGGTCGTCTCCCCGAGCCTTAACCTGCAACTCCCCCAGTTCCAGAACCTCACACTGGGCTCTCCCATTACTCTGTAGCAGCTGTGGAAGGCCATATAGCAAAACGTGGCATGGACAGGATTCTCCAGACAAAGTTGACAAAACACAGCTATCagATGATCCAGTGCTGGTGTCTTCTGACTGCGACAGTACCTATGAAACAAATCACAGTGACAGCAGTGATTTTGCACAGAATGAGGAGGATGGAGGGGCTCGAAGACAGCCCTACAACATGCAGGAGCTTTGCAGGACATTGCAAGCAGATACCCTTCTCTTACATCCCTTACTACCATCAGAGAACAAACCTATTCTAGCCCCTGAACCGCTGGTGATGGAGGGCCTGGAGCCTCTAATGAGTCAGATCAACAATTGGAACTTCCCAATATTCAGCCTGGTGGAGAAAACTGAGGGAAAGTGTGGACGCATCCTAAGCCAGATGTCTTACAGGCTATTTGAAGACACTGGCCTCTTCAAACTCTTCAAGATCCCAGTGAAGGAATTCATGAATTACTTCCATGCCTTGGAGAATGGTTACAGGGACATCCCATATCATAACAGGATCCATGCAACAGATGTCCTCCATGCTGTCTGGTATCTTACCACACAGCCTGTGCCAGGCTTACCTTTGCTGGCTCACGGCTCTATATCAGTCAGTGACTCAGACGCTGTCAGTGGGATCAGTCACGGTAATACAGATTATCTGTTCTCTAAAACCTACCCAAAAATGGAGGATGGCTATGGCTGTCTTTCAGGGCTTATTCCTGCCTTGGAGCTGATGGCACTGTATGTGGCAGCAGCCATGCATGACTACGACCATCCTGGCAGAACCAACGCCTTTCTGGTGGCCACCAGTGCTCCACAGGCGGTGCTGTACAACGACCGCTCAGTTCTGGAGAATCACCATGCTGCCTCTGCCTGGAATCTATTCATGTCCCAGCCTGAGTACAACTTTCTGGCCAACCTAGACCACGTGGATTTCAAGCGCTTTCGCTTTTTGGTTATCGAGGCCATTCTAGCCACTGACCTGAAAAAGCACTTTGACTTTTTGGCTGAGTTCAACGCTAAGGTGGGGCATGAAGGTTGCTCAGGTATTGACTGGTCCCATGAGAATGACCGACTTCTGGTCTGCCAGATGTGTATCAAGCTAGCTGATGTTAACGGGCCGCTGAAGCACAAAGATCTTCACCTGCAGTGGACAGAGGGCATTGTCAATGAGTTTTATGAGCAAGGTGATGAGGAGGCCAGCCTGGAATTACCCATCAGCCCATTCATGGACCGCTCAGCCCCCCAGCTAGCCAAGTTGCAGGAGtctttcatcacacacatcgTAGGGCCGCTCTGCAGCTCCTATGACACAGCTGCCCTCATGCCTGGCCGGTGGGTGGAGCCTCAGCCCAGTGATGCTGAAGAAGGATCTGGTGTGGAGGAGactgatgaagaagaagaagaagaagaagaagattcaACCGAGGAAGATGCCTCCACCAACTCAGATCAGTCTCAGAAACTGATGCCCAACATGCGACAGAAAGTCTTCTGTCAGATCACTCAGTACCTTTTGGAGAATCATGAAATGTGGAAGAAGGTCATTGCTGAGGAGGCCCAAAGCCAAACAAAGCCAAACAAAGCCTCTGACCCAATCCTGGCCATtcatgaagaggaggaggagacaaTAAGCAAGGACAAGCCAACAGTGGACCAGGAGCAAAAAACAGAAGGAGGAGAGATATGGCCATCAGAGGAGCAGCGATATGACGCATCAATAGAAGATGAACAGACTGAATAAAGTGAGGACACGAGAAAGCAACAGGAAACAGTTAAGAAATATCAGGAAACTGAAACTCAAGACACAAGCTGTAGAAAATCATGGAGAGAAAAATACGGAGATGGGATGAGACTTCGGAGGATCAGGAGATATGGAGTGAACGAGAGAGTTATCTAGTCtaggatattgtcacaaagcctTTATTTCCAAACAAGACTCCTGATAAATGGTTGCCAGCACATCACTAAGACACAACACTGTAGATTCTTTAGGTGAACAAGTTTCTATACGAAACAAGGGTGGTATCCGAGCGTCTTCGGGTAGGGCTTATTTGCTAGATCCAATAAAATGGGATTTCTGAAATTAACATGAAAACTCCCCACTCTGGTGGTGGCCAAACCACCAATTAGTGCTGAAGTTCCAAAACAACTTCCATGACCAGGGTCTCAGTTATGTGTACTTTTTAGTCTATTCATTTCAGCAAGTATTTTTAAGGACCCTGGTATTAGACTGATGCAAGAATGAAGTCCGTCATGATACACCTAGCCCCTTTTGAGCTCATAGCAATGTGATGGGGAAGTACACATTCCTTAACACTCAAATACACCATAATCCATATGAAGGAAAGAAGGTTCAGGAAATAGCATGCACCACATGTGTAACACTACTTAtctaatcttttttctttttaagttaaaaacatctgtccttttcttttgtttgccaCTTGATTTCCTGTGCAAGTTTCATGCCTCCACAGGTTCACCACCTGCCTGTAGAGTTAGGCACCATGACTTTGCAGGTACACTAGTGAATGTTCAAGTGTTTGTCCTTGTTAATATAAATTACCTGTTACttttttcaaaatcatttttcaggttttttttttttttttgggttgcaATAGCTTTCGTTTGTGACCTGACATTCCTGTTTATCAAGACATAACAGCACTGTAAATACTGTGTAACATTTCTTCCTTTCGAATACTTATTCTGCCAGTGCACATTTGGAAAAACAGAATCTCCTGTTTTTATATGGTTAGTTAGAAAGACGTTACATAGACACTACGTACTAAAGCTCCAGCTCTATTCAAGTTCAtacctgtgtgtttttgtataatATGATTCTTTAAAGATGAAGTATGCAATGCAGTTACTTTGCTTATTAAAACCGAAGTAAATCAATTCCACACAATCCCACATCCTATAGTTAGGACACAGCATGTATTCAGTCCTGGTATTCGTGCCATTTCAGCCTTCTGTGTCTTTGACCCACACGTTTGAATTGCCAGTTATCAGCCGAATCTTAGATCTGTTGGTCATTTCATGCATCTTGAGTAGCAAGTATATATCCATATAGAGATTATATACATAGAAATGCAAGTGTAAATGCACCCAAAGACTCAAACctgattgtttttctaattTTGCCTCAATGCTCGTATGATTTTTGTTACATGTTTAATACAGAAAGCAAACAGCTTTCAcccagttccaaaaataaaaaaacaaatatgacgTGCCCTGCTTGGAGGCTAAAGAGAAAGCATTGGATAAAGTCATGCACTCTCGCTAAACAAGGAAGGCCACTCATACTCCAGCCATCCGATAGCTGCTATGTCCTAGAGGCACCGTAGTCATGCACATAGGCATGTGAACTGCTAAGCAGCTAACCCCTGTAACTCAAAGGAGAACCCCACATAGGCATGAGACATGGTGTATCGACACATGCAAGAGAGCAGTTCACTACAAACAGCTACAGCACCGATGTGTGCTGCCTGGGCTGCCTTAGACACAGGGACAAAGGGAGAAGCCGATTGATTGTGACTGCAGTTCAGGGATAGATAATGCAGTCTGATGTTCTTTTATAGACGTAATCAGCTTGCGCCTGATGCTACTGTGCCATAATTTAGAAGGGGTGCTAATTAAATTTGTAGAATTGCAAAGTGGGAATTGGGTGTTTGTCTTTGCACCTCAGTTTAGTTTAGAAATCCCCACTTCAATTTGCAGCATAATGTACGCTTTCTTATCAACAGCCAGCACATTAAGCAATACTGACACATACTGTAGACTGATGGTAGTTTTATGATTGCCATCATATTATTATGAAGTTGggcataatatatattttttcacagTGCAGCTGTTTGTGCCAAATATTACTTCAATAAACAACTGCGTTGTTGAAGCTTTTTACGGATAATAAGGTATGTGTACGTCAGGTgtgctttctctgtgtgtgagtgcatgtttGTATGGAATCAAGTTGAGTTCATTTGGAatcaaatcaattttttttaatagtgcctaaaaaagaaaatactctGAGGCCTTACTGACTAACAAAAAAGCATTTAGataatacaaacaaaactgaGGAGATGACGCTTTTGGCACCatgttttctttgtattttttcattactttttgctatgtatatatatatatataaaacagaagAAGGAGAGATATGGCCAACAGAGGAACACTGACACGAGAGGAAAGTTGTTTCTGAGTATACTCATTAGCCAGGTCTATTTACATTGGGTCCACATGAAATTTCTTATTAGGTTTCATACGAATGAAGGGGATCCAACTTGACAATGAATAAAAGACTgaacaatttatttgtttaaaagcaGTTCCCGAGTAGCGCAGGGGTGATGTGCTCAGCTAGGATGTAGGAGAGGTCTTCATGTGTCGTAGAGAAAATGCCCAGACTGTAACCTTCATTTGATTTGGgataaattaatttcattttttagaggtttctttttgttgttgttgttttaattgttggtttattgttttaaagtgtGCATAGACTGAGCTGAATGTCTACTTTAAGGTAAATATGCAGCTTATTCACAAGTAAAGTTCAAGTATGGTACAGTCATTAATAAGCATCTGGCTAGTGTCTAAATAGTATTTTCGAAATATTCTTCAGAGTAGACACAAAAACACGTAATAATTTTAGTAAGAAGAATAGTTTTCATCCcaagtaaaaaatgaaaacagtagGTATACCATGATATATGTGCTAAAGTACTAAAGTATAATAAATTTTCAGTAAGGGATTCTGACTTACTGAATAGACACAACACAGGACCATGTTGGACATGCTATTTAAAATGTAGTTAGCCAAGCTACAAGTATGTGTAAGTATACATAAAAAGTATGTATCTCAGCCACACGTTATAGTCAAGAGTAgcctttaatgttgctgaagAAAACACTGCACCCCAACcataaaaaatactgtatattgtgtatgttCAGGAAATGGAATGGTTTGgcatttaaaaacaatacaaaacaattaataaaacatttctaaactaCTTGCAATTCActctaacaaaaaaacattatgctAACAAAGCGATGCTACCACTTTGGTACTGGAATACTAATAGCTTGACACCACTGCCCAACACTGACCCCACCTGTGAGTAAATaagatgtttatattatttcctAGAATCCAACTTGTTAAGTGTGGTTACAGATTCAATCTttactgaaaagaaagaaaggacaacTATTTGCCCTGTTTAAAAACTGACTCGGTGTTGATCAGCTGCTAATGGTAAAAGGCAGTGACGACTGTGtaagatttttttgtgtggtGGCTCAATGATGCGAATCATATATAATATCCCTTCTACTGTGGTTGTGATTGCTCTGTCCTCACTCTTGTCAATGACTAAACTGAAGCgtcatattaaaatgttaaacaataaACTATGACAGAGTGGCATTGCAAACATTGTAGAAAATACTGCAGAAAAAAGTGTATCAATTCCTCAGTCATGTTTGcaatatctaaatatttttgCAGTAGAGTGAGGCCTCATCTTTGTGATACACTCTATGACCAAATGtttgttgacacctgaccatcacacccatttgaGGGCTTTCCCCAAATTGGAAACATTCAATTGTATAGAATAAAATTTCCCtttatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339429 lncRNA downstream 73108 21786152 ~ 21787372 (-) True G286613
XR_003404520.2 lncRNA downstream 208049 21651622 ~ 21652431 (-) True LOC113544611
XR_003404510.2 lncRNA downstream 262080 21584065 ~ 21598400 (-) True LOC113544500
TU339340 lncRNA downstream 286380 21573825 ~ 21574100 (-) True G286546
TU339096 lncRNA downstream 363861 21496377 ~ 21496619 (-) True G286337
TU339527 lncRNA upstream 140224 22072211 ~ 22075279 (-) True G286694
TU339531 lncRNA upstream 165621 22097608 ~ 22097821 (-) True G286698
TU339533 lncRNA upstream 184610 22116597 ~ 22116953 (-) True G286700
XR_004579983.1 lncRNA upstream 216286 22148273 ~ 22149018 (-) True LOC113544512
TU339588 lncRNA upstream 257332 22189319 ~ 22235065 (-) True G286740
XM_034313294.1 mRNA downstream 18045 21796905 ~ 21842435 (-) True slco1c1
XM_034313296.1 mRNA downstream 18045 21797091 ~ 21842435 (-) False slco1c1
XM_034313295.1 mRNA downstream 20424 21796905 ~ 21840056 (-) False slco1c1
XM_034313297.1 mRNA downstream 20427 21796905 ~ 21840053 (-) False slco1c1
XM_034313049.1 mRNA downstream 78395 21761681 ~ 21782085 (-) True cog5
XM_026943445.2 mRNA upstream 33145 21965132 ~ 21980322 (-) True aebp2
XM_026943437.2 mRNA upstream 51029 21983016 ~ 22089416 (-) True plekha5
XM_034313207.1 mRNA upstream 54762 21986749 ~ 22089416 (-) False plekha5
XM_034313206.1 mRNA upstream 54762 21986749 ~ 22089416 (-) False plekha5
XM_034313208.1 mRNA upstream 54762 21986749 ~ 22089415 (-) False plekha5
XR_004579970.1 other downstream 389380 21460826 ~ 21471100 (-) False LOC113544587
XR_003404518.2 other downstream 389380 21460827 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other downstream 389424 21460826 ~ 21471056 (-) True LOC113544587
XR_004579972.1 other downstream 389425 21460827 ~ 21471055 (-) False LOC113544587
trnaa-ugc_16 other downstream 1438008 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU339722 other upstream 554249 22486236 ~ 22489467 (-) True G286852

Expression Profile