RNA id: XR_004579971.1


Basic Information

Item Value
RNA id XR_004579971.1
length 3736
RNA type misc_RNA
GC content 0.41
exon number 8
gene id LOC113544587
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21460826 ~ 21471100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGAATGCCCGAGTACCATGCCGAGTCTGTGCgcttcagagagtttcaaatcTACATCATACAGTACTGCAGGTTGATCAACAGATGGCGCTAAatctgcacatgcacacatggaAAGCAGGTTCAGCGATCATGCTTCTGCTCTCTTCAGACTCATTTTCTGTGAATTGAATCTCACAAAAATCGCTGTGCGAACGGGGGCACATgcaaagttttattattatctggACACACAGTTTTGTGCAAGACAGAAGATGTGAAGACGTATGGATTTGAGAAAGTCTTGCGACCTCTTTTGCATGATCTCAAAACTCAAAAGCAAGggtcgtgggggagcctggagcctatcccatagaactcagggcacaaggcgggggacaccctggtcGGGATGCCAACCCATTGCAAGGCACAATctcgcacacattcacacactacagacaatttagaaatgccagttagcctacaacgcatgtctttggactgggggaagaaactggagtacccagaggaaacccctgcaGCACGGGACACACACAGGGTAGAGGCGGGATTGGAACCACCAACCTTGTGGGAAATTGCAATaAAACCGGTTTGACGTGATGGGTACCCCAGCCAAACTTCTAGTGATCTTGGGAGAAAATAATAACACCAGACTCATTGAATGACCTTAAAAGAGAAATCCAAACACAGCTTAGAGTCTTTGAAGATTTTTTACTTCAATTCAAAGATCctgattttaatgattttgtcAACCTCAATTCAACTTCAGACATACAAGACAGAGCTACACTCAAAGTCATTCAGTTGCCTTCATCTACAAGTATCCCTTCTGCTTCACCTGTGCCAGAAATAAATGAGGCATCTTCAGTTTCATCCTGTGACACAGACATAGTCTCATCCCCACAGTCATCTGTACTCTCCACTCCAGAATCTGTGTCCTCCGTTAGAAGTCAGAGATGGCTTGAAAGTTTCCTGATACCACAGTTTAGTTTTGATGCTGAGATGCAGCTACAAAAAGTTCAACTTGCTTGTCAAACTGATCGCACTCTCCTGAGCCCCAGTGTCAAGCTCAAGTCTGACATTTTGGATGCTTTAGCTTCAGAAATAATAAAGTACAAGGCATACCCTTCAAGTGCAGATTGTGACGTAGCTGCTGCTTTGGTACGGAAGCACCGGTGCCTCAGGGAGAAAGGCTCTGTGAGCGGCTACTATGGCTGgaaaattagtttaaaatacAAGACGGAAAACTACAGAACAAAACTGATGAACATAGGATGTTCTGAGCTAAACATCATCTCCCATAAGCGGAAAGGATCTATGGGAAGTCATAACCAAGTGAAGAGACCTAGAAAAGCCGAGGTAAATTACTATCCAGATTACCCATTGGGTGAAACAAAAGATACCCTTGAAAAGCAAAGGATTGCACTATTGTCTGAGATGACTAAAAGAAACAACAAGCAGGTTATTAAGGCACAGATGGACAGAACATTTGCACACAGGAGGCATGAGGTGTTCGAAGATTTGCCTTTCATCCTGGAATTTAAGAAGAGATGGCCAGCACTCTTTACTGAGCGAGAGgtATCTGCGGAATTCAGCAGAATTACAACAGTCCCTCTGGTGTCCAAATTTATGGGTCAGCTTGATCAGTTCTCAGCCCAGCTCctcaaaattttcaaaaagaaaGGAGGAACAGGGGCTCAGAAGATTACAAGTATCCTGTCAGTTATGGATCAGAATGccaccagaaaaaaaacatgaatgcgTCCTGAGAGCACtttctgtttatgtgaatgAAGATCCCTGAAACCTCGTGGAGTACATGgaagtTTCACATGACGAATCCCTAACCTCTATGCGCAAGACCACTCTAGGAATCTATGTCATCATACACGAAGGGGCAGAGGTTACAGACCTTTACTTAACAAAGTTAAGTAAAtccaacattttgtttttttgaatgtATGTGAAAGATACCCTGGAGACACAGTTTTGCACCAGATTATTCTACAAAGACACAGCAGAATGGATGATCCTGGTCCTGGAACGaaggtcttaaaaaaaaaagggccgcATTCAGTGCTGAAAGAAGCCCCTTTAGCCTGACTGGACACATTCACTCACATACATTTTTTCAGGAAAACTGTTACTGAACGGCATCGATTTGAGAATTAAAATGGTTCGTAGTAAAGATGAATTTTGCTTGATGAAGGAAGGAAATGCCAATTTCATTCTGGAAATCCTGAACTCTTCTCTTTTTACCACAGCCAAATACCCCATCGAAAGAGTCCGCATGAAGACCTTCAGTCTAGCTGCAGGAAGCTGCATTTGTTCACAAGAGAATCTTTTCCTCGGAGTTTTACCGAAAACCATTATCTCTGGGATGGTAGACAACAACGCCTTCAGCGGAGCATACAATAAAACtccttttaattttatacattacGATGAGGAGTTTATTGCGCTCTATGTAGATGGTACGCAATATCCTGCAAAACCGTTTCAGCCTGTTTTCCAGTCCGATAATGTGGTTCGCATATTCCATTCTTTAATTTTAGCAACAGGAAAGCAGCTAAAGGATCAGGCGATGGCAATAAACAGAGAAGAGTATCTGAACGGTTATACTTTATTTGCATGCACCCTGAATCCTGATGATGATTGTGGGCAACATTTGTCATTAATAAGGTCGTGGAATATGCGTTTTTAACTCAGATTTCGACTCAGCTTCCGAGAACAGTGAATCTAATTGTGTTCGCCAGTTTCGACAGTATTCTAGAAATAAACAATTGAAGAAACGTGCTCATTGATTACCAGTAACTCACATGGATACCAGAGAACTAACGGAGGTTATGAGAAGTTGTCCTGAAATAGATAAAATATTCTGTGGTGTGATGGCCTGTGACCAGCTGCCTGCGAATACACTGAGAGAGTTTCCTGCTTTATtcatcatgaacacacaccGGACACACGGGACACATGCCGAGCGAGCTCTGGCTAGCTTTATGTCTTAACCACGAAACCTCTGGAGAGTTTTTTGACTCATATGGAAACCCTCCAGACTGCAAACTCTTTCCTGActctattaattatttttttgacaaagaactgttgcaaaataaaatataacccTGTACAAGTTTAAACTTTTACTTCTGTTTGCTGCAggctacactgtgtgtttttttctgtcacagAGCAAAAGGTTACTCATTTAACTGTATTATGTCTACCTATAGCAAAGATTtaaatagaaatgataatgttgtagtatcttttgtttaaaaaaatgtatcctagagtaaataaaaagcaatcaTTTACATGTGTACAATGCGTTAACTCTCTAGATATGTTTCAATTGCGTGTGTAGTATAATATTAAATCACAAGGTTTCACAAGAAAATTGTTGATGCaaagttattttattgaaataaatggtATAAAATACATCACAACAGACgtcagtcattttaaaaatcaaaccaGACAGAACGGTTAAGAGTGGGAGAGTTAAAATGGTCTCAGGTGTATAAGAATCATACTCTTTACTTTTAGGGGTGAAGAAGGGGAAACCAGTTGAGAGGGGTATGCCTGAGGGGACGAGTCTTTAGATCTTTTTATGGCAGATATTTTGCGGCAGACATCACCATTAGGTATTGCTGAAAAAGGTATATTTAGACTGGCTACAGTCTGTAATAATTCTCTCCATCCTAAAGGCCTCCAATCATCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339057 lncRNA downstream 51528 21409044 ~ 21409298 (-) True G286305
TU339053 lncRNA downstream 156297 21304255 ~ 21304529 (-) True G286301
TU339022 lncRNA downstream 225401 21235182 ~ 21235425 (-) True G286272
TU338918 lncRNA downstream 297906 21104808 ~ 21162920 (-) True G286192
XR_004579864.1 lncRNA upstream 20585 21491641 ~ 21492712 (-) True LOC117599448
TU339096 lncRNA upstream 25321 21496377 ~ 21496619 (-) True G286337
TU339340 lncRNA upstream 102769 21573825 ~ 21574100 (-) True G286546
XR_003404510.2 lncRNA upstream 113009 21584065 ~ 21598400 (-) True LOC113544500
XR_003404520.2 lncRNA upstream 180566 21651622 ~ 21652431 (-) True LOC113544611
XM_026922871.2 mRNA downstream 234483 21189925 ~ 21226343 (-) False ppfibp1a
XM_026922869.2 mRNA downstream 234483 21189925 ~ 21226343 (-) True ppfibp1a
XM_034313364.1 mRNA downstream 245279 21189925 ~ 21215547 (-) False ppfibp1a
XM_034313152.1 mRNA downstream 281315 21174184 ~ 21179511 (-) True LOC113531875
XM_026922827.2 mRNA downstream 288566 21164706 ~ 21172260 (-) False si:dkey-222f8.3
XM_034313134.1 mRNA upstream 132844 21603900 ~ 21630503 (-) False nrf1
XM_026943465.2 mRNA upstream 132844 21603900 ~ 21630503 (-) True nrf1
XM_026943483.2 mRNA upstream 260533 21731589 ~ 21751582 (-) True ints13
XM_034313049.1 mRNA upstream 290625 21761681 ~ 21782085 (-) True cog5
XM_034313294.1 mRNA upstream 325849 21796905 ~ 21842435 (-) True slco1c1
trnaa-ugc_16 other downstream 1038354 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU338301 other downstream 1140776 20313067 ~ 20320050 (-) True G285607
trnae-cuc_38 other downstream 3248433 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 3272828 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 3368282 18092473 ~ 18092544 (-) False trnaa-ugc_14
TU339722 other upstream 1015180 22486236 ~ 22489467 (-) True G286852

Expression Profile