RNA id: XM_034312958.1


Basic Information

Item Value
RNA id XM_034312958.1
length 1863
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC117599422
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 376457 ~ 394253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGACGCTAACATACTCTGtctctTCTCCAGGTGATCTTTCCTGAACAGAGAGATGAAATCAGCAGAGAAACTCATCATCAtcgtttgttttctgtttcaaggtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTAAAGAAGAATTTGATGCAGACCTCAAGACAGCTCTTACAGGAATCTGGAATAAAGACGACCCTTACGAAAACAAAGTCTTTAACTCTAAAGAAACTACAGAGAACAAGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAACATCAGAGAGAGTGACAGTGGAAGATATTACTTTAGAATAGAAACTTCAGGAAAACTGAAAGTGACGTATAAATCTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCTGCTCCAGCTCCATGTCCCTCTAACCTCCCCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAAGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCGATTTCACCTGCACCGCCACCTACCAGCTCCAGAACAAGAACAAATCAGAACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAATTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTGAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtATGCTCCTAGAAACACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGAACTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAACCATCTCACCATCAGCAAGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatGTTCCTCAGTTCTCTCCCTCCTCCAGCTGTAACACCACTCAGGATCTGATCCTGTGTTCCTGTGAGGTTCATGGAAATCCGTCTCCTAAACTGGAGTGGCGTCTCTCAGGTCAAACTGTCCTGCCGTCAGAAGCCACGCCCATCCAAGTGGAGTCTGTGGGCAACACGAGTTTAAGAAGATCCATTTTGTTTTCCATCCCTCAGTCAGTTAAGGACACGCCCACTCTGCAGTGTGTTGGCTCCAATAATCTGGGCAACGCCTCTCAGGTTTTCTTCTTCATAACTAAGGCTCAGAGGCCTGCTGAAgaacacagacacactgcagtactTTATCTggttctatctctctctgtggttctccttctgtgtgttggtgttattggATTTTTCATCTACAAATTAAAGCAATTGTCCAGGAAAATAAAGGTTCTACAGACAGGAGATACTTATgcttctctccagctctctgctGTACAGAACTCTGATTATGAAACTCTGCAGACTAACAGAGggaggagagaaaaaaagaacaactcCACTAGCATAGCTCCGCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325947 lncRNA downstream 11433 362349 ~ 365024 (-) False LOC113531599
TU325941 lncRNA downstream 29008 347214 ~ 347449 (-) True G275049
TU325911 lncRNA downstream 83861 291650 ~ 292596 (-) True G275024
TU325909 lncRNA downstream 89433 285815 ~ 287024 (-) False LOC113535352
TU325917 lncRNA downstream 91226 250671 ~ 285231 (-) True G275029
TU326067 lncRNA upstream 46540 440793 ~ 448307 (-) True G275141
TU326058 lncRNA upstream 50032 444285 ~ 445428 (-) False LOC113531866
TU326041 lncRNA upstream 93539 487792 ~ 488922 (-) True G275126
TU326075 lncRNA upstream 120731 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA upstream 120731 514984 ~ 518042 (-) False LOC113532194
XM_034312957.1 mRNA downstream 7420 354974 ~ 369037 (-) True LOC113531599
XM_034313069.1 mRNA downstream 89405 281434 ~ 287052 (-) True LOC113535352
XM_034313037.1 mRNA downstream 122612 248336 ~ 253845 (-) True LOC117599453
XM_034313090.1 mRNA downstream 217175 134189 ~ 159282 (-) False cmah
XM_026928103.2 mRNA downstream 217576 131691 ~ 158881 (-) False cmah
XM_034313101.1 mRNA upstream 9708 403961 ~ 557687 (-) False LOC113531866
XM_034313105.1 mRNA upstream 9708 403961 ~ 511761 (-) False LOC113531866
XM_034313103.1 mRNA upstream 9708 403961 ~ 511745 (-) False LOC113531866
XM_034313102.1 mRNA upstream 9708 403961 ~ 511725 (-) False LOC113531866
XM_034313099.1 mRNA upstream 9708 403961 ~ 511722 (-) True LOC113531866
TU325948 other downstream 7423 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 122640 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 230417 144583 ~ 146040 (-) True G274979
TU326084 other upstream 142193 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 188945 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 203161 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 214750 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 234811 629064 ~ 631387 (-) True LOC117599510

Expression Profile