RNA id: XM_034312970.1


Basic Information

Item Value
RNA id XM_034312970.1
length 693
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC117599430
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1366111 ~ 1376319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACTTTAGAACCTCATGGAAACttcaaatatctgtgttttactGTAGACTATGAACCTGAGATTACAGCTGATCAGGAGACAGgtcacACAGAGGCTCGGCTGGTGAACGGACCGGACTCCTGTTCTGGTCGAATGGAGCTCCAGTACCTTGgatcatccATGGCGTTTCATGAGGGGCGAAAAGCGGTTGTCTGGAGGGAGCGCGAGTGTCAGGGGAgatttcagctgaGTGAAGATGGTGAATGTGGACACCAGGAGGACGTAAGAGTCAtgtgctcagAGTTTAGAGAGATCCGACTCACGGAGGGCTGTGAGGGGAATCTGGAAGTGTTCTACAATGGAACCTggggtaatgtgtgtcacaatcagatggatgatgagacagtaaacatggtgtgtcgagagctgaactgtggaagAAGTGGCAGTCTGTCAAACACTGAAGCACGAGTAAAATCTGCTCCTAACTGGCTGGATTATCTGAAGTGTAGGAAACACGACTCTAATCTGTGGCAGTGTCCATCTTCACCCTGGGGACAGAACAGATGTGATAATCGTGATGAGGTGGCTCGTATTACCTGCACAGatgaTGGAAAGTCTCTACGTACGCAAGAAAAGTGCTCTTCATTTCCCTCTCAGAAACATTGCACAAagcactggtctctcaggctgagtggaggaaaATGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326381 lncRNA downstream 52576 1097145 ~ 1313535 (-) True G275382
XR_004579911.1 lncRNA downstream 72135 1292165 ~ 1293976 (-) True LOC117599498
XR_004579887.1 lncRNA downstream 103401 1261642 ~ 1262710 (-) True LOC117599476
XR_004579888.1 lncRNA downstream 103401 1261646 ~ 1262710 (-) False LOC117599476
XR_004579945.1 lncRNA downstream 124207 1241367 ~ 1241904 (-) True LOC117599532
TU326407 lncRNA upstream 10233 1386552 ~ 1410588 (-) True G275408
TU326366 lncRNA upstream 20120 1396439 ~ 1462056 (-) True G275369
TU326409 lncRNA upstream 33372 1409691 ~ 1433883 (-) False G275408
TU326415 lncRNA upstream 37073 1413392 ~ 1454206 (-) True G275412
TU326417 lncRNA upstream 40051 1416370 ~ 1441145 (-) False LOC117599432
XM_034312968.1 mRNA downstream 68212 1263749 ~ 1297899 (-) True LOC117599428
XM_034312967.1 mRNA downstream 110925 1242138 ~ 1255186 (-) True LOC117599427
XM_034313122.1 mRNA downstream 188877 1175310 ~ 1177234 (-) True LOC117599470
XM_034312964.1 mRNA downstream 458264 907230 ~ 907847 (-) True LOC117599426
XM_034312963.1 mRNA downstream 459381 905247 ~ 906730 (-) True LOC117599425
XM_034312971.1 mRNA upstream 15581 1391900 ~ 1395944 (-) True LOC117599431
XM_034312972.1 mRNA upstream 39586 1415905 ~ 1425651 (-) True LOC117599432
XM_034312975.1 mRNA upstream 995305 2371624 ~ 2373304 (-) True LOC117599435
XM_034312976.1 mRNA upstream 1036223 2412542 ~ 2415193 (-) True LOC117599436
XM_034313123.1 mRNA upstream 1106064 2482383 ~ 2548694 (-) True LOC117599471
TU326402 other downstream 70734 1294140 ~ 1295377 (-) False LOC117599428
XR_004579908.1 other downstream 83177 1282454 ~ 1282934 (-) True LOC117599495
XR_004579907.1 other downstream 233542 1132088 ~ 1132569 (-) True LOC117599494
XR_004579897.1 other downstream 495636 869990 ~ 870475 (-) True LOC117599484
XR_004579923.1 other downstream 734724 629064 ~ 631387 (-) True LOC117599510
XR_004579909.1 other upstream 11877 1388196 ~ 1388678 (-) True LOC117599496
XR_004579902.1 other upstream 34812 1411131 ~ 1411615 (-) True LOC117599489
TU326424 other upstream 89540 1465859 ~ 1577516 (-) True G275420
XR_004580038.1 other upstream 119743 1496062 ~ 1496168 (-) True LOC117599633
XR_004579898.1 other upstream 212994 1589313 ~ 1589798 (-) True LOC117599485

Expression Profile