RNA id: XM_034312978.1


Basic Information

Item Value
RNA id XM_034312978.1
length 1434
RNA type mRNA
GC content 0.59
exon number 3
gene id LOC117599438
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2628665 ~ 2630328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggaacaggaagtacacattctcctgaggaaggaggccatcgaggtggtccctcctcgcgacagagagtccgggctctacagccggtacttcattgttcctaagaagggtggagggctgcgtcccattttggacttgcggcagttgaacctctcagtcgcacgactgtctcagatcaggtccgaggactggtttgtcacgatcgacctaagagatgcatatttccatatctccatccttcctcaacacaggaagttcctgaggttcgcttttgggggtgaagcttaccaatatcgggttcttccgttcagcctagcactctcaccccgcaccttcacgaagtgtgtggatgctgctctggctcctatgcgactccggggcatccgcatactgaattatatcgatgactggttgatattagctcgatCGGAGCAGGTGGcgctgggtctgatggcagctgcgtccaacgtaataccttttggcctgctgtacatgagacccctacagtggtggctcaagaccagggggttctccctgaggggaaacccgctccgcatgatcaaggtcacgcggcggtgcctacgtgccttagacatgtggagggaacctgggttcttgtctcagggcccggtgctgggaGCTCCTTGTCGCCGCGTAACACTAGCGACGGATGCATctctcaccggatggggagcggtcatgagtggctgctctgcccgtggtctgtggagcggccgccatctcacttggcacatcaactgcctggagatgctggccatgtttctagcactgaaacactttctcccggaACTAAGAGgtcgccacgtgttggtgcgcaccgacaacacggcagtggtctcttatatcaaccaccagggaggtctgcgctcgcgcccctttacaggctggctccagatccttgtgtggtcccaggggaaactcctctcgctgagagcagtttatatccctggctgtctcaatatgggagcagacgcCCTGTCAAGGCAGGGAccggtgcccggggaatggaggctccaccccgaggtggtggagcagatatggcgtatgttcagccgagctcaggtggatctgtttgcgactcaggagacatcacactgtcccctctggttctctctgactcgtCCAGCTCCCCTAGGACTGGATGCTATGGTACAGACGTGGCCGAGGCCGCGTCTGTACGCCTTCCCCCCGGTCGCTcagctcccgggagttctggagagagtgcgccgggacggggTCCGCTTGCTGCTAGTAGCCCCATTCTGGcggggccgagtatggttcttggacctgatttcccttctcgacggctctccatgggagattcccgtcaggagggacctcctctcacaggcggggggCGACATCCTTCACCCCCGCCcagagttgtggaagctgtgggtgtggcctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326541 lncRNA downstream 59401 2535444 ~ 2569264 (-) True G275524
TU326540 lncRNA downstream 79013 2514744 ~ 2549652 (-) True G275523
XR_004579927.1 lncRNA downstream 168553 2459061 ~ 2460112 (-) True LOC117599514
XR_004579931.1 lncRNA downstream 169824 2457641 ~ 2458841 (-) True LOC117599518
TU326537 lncRNA downstream 191598 2436635 ~ 2437067 (-) True G275520
TU326553 lncRNA upstream 2098 2632426 ~ 2709379 (-) True G275536
TU326881 lncRNA upstream 204372 2834700 ~ 2845904 (-) True G275815
TU326970 lncRNA upstream 349509 2979837 ~ 2981862 (-) True G275891
TU327113 lncRNA upstream 587391 3217719 ~ 3221204 (-) True G276021
TU327114 lncRNA upstream 587861 3218189 ~ 3219050 (-) True G276022
XM_034313123.1 mRNA downstream 79971 2482383 ~ 2548694 (-) True LOC117599471
XM_034312976.1 mRNA downstream 213472 2412542 ~ 2415193 (-) True LOC117599436
XM_034312975.1 mRNA downstream 255361 2371624 ~ 2373304 (-) True LOC117599435
XM_034312972.1 mRNA downstream 1203014 1415905 ~ 1425651 (-) True LOC117599432
XM_034312971.1 mRNA downstream 1232721 1391900 ~ 1395944 (-) True LOC117599431
XM_034312980.1 mRNA upstream 34069 2664397 ~ 2667515 (-) True LOC117599439
XM_034312981.1 mRNA upstream 38027 2668355 ~ 2669336 (-) True LOC117599440
XM_034312982.1 mRNA upstream 41693 2672021 ~ 2678032 (-) True LOC117599441
XM_034313335.1 mRNA upstream 574960 3205288 ~ 3246996 (-) True pawr
XM_034312985.1 mRNA upstream 628690 3259018 ~ 3335017 (-) True ppp1r12a
XR_004579901.1 other downstream 85034 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 121571 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 173584 2454252 ~ 2455081 (-) True LOC117599505
XR_004579944.1 other downstream 199724 2428508 ~ 2428941 (-) True LOC117599531
XR_004579940.1 other downstream 247331 2379889 ~ 2381334 (-) True LOC117599527
TU327069 other upstream 512206 3142534 ~ 3201297 (-) True G275981
TU327062 other upstream 655509 3285837 ~ 3293790 (-) False ppp1r12a
XR_004579995.1 other upstream 799862 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 906669 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 934707 3565035 ~ 3571926 (-) True LOC117599595

Expression Profile