RNA id: XM_034312990.1


Basic Information

Item Value
RNA id XM_034312990.1
length 2855
RNA type mRNA
GC content 0.49
exon number 15
gene id casc1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5405474 ~ 5419057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACGAGTGGACCAGAATTCGCTGCAAACAAGAAGGCGATAATACAGAAATTGGCCCTGCCAAGAAGAAACAAAGCAAGCTCAGCAAGGCCGAGAAGGAGAGGttgaagaaagaggaagaagaacagAGACTCAAGGAGGAGGAGGAAGCTCGCCTGATTGCTGAgcaagaagagaaggagaggctggagagagaacaaaaggaagaggaagaacGACTGAGACTCGAGTTAAAGGACAGAGAGCGAAGAGAGGATGAGCTGAATGAACTACGCATCGTATTGGAGGAAAACCAGAAAGAAGTGAACATGTGGGAAGCTGCAGCCAGGGAGAAAGCTGAATGGGATCGGTACATGATTTGTGACGGCAGTCCAAACCCCGCTGTTCAACCCGAGATCAATACCTTCATCACTCTGTGGAAGGAGGACCCAGAGGTGGACATCCAGACCATCCTACAGCAATGTGCTTTGGCCTTGCGActaACAGATGAACTGGAGCTTCGTTTGAGTCAGGAGACTGAACCCGAGATTATTCAGGTGTATCAGGACACACTTCGGTCTCTGCAGTGTCTCATCCACGCCAAACACCAGAAAGCTGCTGAGGAGATCCTGAAGtCAGCTAAGACTTGTTCAGACATCGAGACCGGGAACATGCAGAAGATAGTGCGAGATGATCACATCACTCTGTGCTTGTGGGCAAACATCAACAAAAATCCCAGATTTAAAGGCTACCATTTCCAGGAGGCGGGGCTGAGCTTCGAGCTTCCTAAACCGCTGGCTATGAGTGACATTTGCGTGCGGATCCTTCACACCCGCTACGATCACCTGAGCCACCTGAGCATCCGGACACAAGCTCAGAATAAAAGTCCTgctacagaagaagaagaagaagccgaAGCAGACGCTGAGACTCTCAGTGAGACCCCTAAAGTGCTGGAGGATGGAGAGATGACGGGAGAAGATGAGGGGAGAGAAAGTGTACAGCAAGAAAAGGACGATCTCCAGTCACTTAAATCATCTGAAGGCAAGAAGagtaAGGTTAGTGTGCACTCAGCTAAAGAGGGGAGGAAAAGTTCTTCACTAAGCCTACAGGAGGAGGCAGAGGATCATTCGGAGAGCAACGTGGAAGGAGTGACCTCCTCTGGAGAAGCAGAAGACGAGGCTGACCCTGAACCGACTGTAGTGGAGCCACCGACCGACAACACCGAGCTGCACATCGTCGATCTGCATCGGTACACGCCCCTGGGCGGAGTCTACTACTTTGACGTGTTCCATCTACCACCCCAGTCTCTCACCATCAACGACTGGGAGCTGACAGAGATATTGGATACAGGTCTCCAGGACTTCCTGTATCCCTCAGAACAGCCTCACAGCTCTGTGTCAGCGAAGCTGGAGGACAGCGGTACACTCTCTTCCCCACCTGTAGGGGTCACTGTGGTTCTGCCCGAGTCTGTGATCTTCATGCAGGAGCCACAGGTGGCGCGATGGGACCCAGTCGGTCAGCACTGGCGAACGGACTGCATCGCCGAGACGTCATACAACAGCGAGGCGCGCAGCATCTCCTTTAAGATGGACGCTTTCTGTGCCTTCACTCTGCTACAGGAGACGCACGTCAACATGCTGTTTCAGTGTTGGGAGCTTCGACCTCAGGGTCAGGACTCGGTCACGCTCACCATCACTGCAGCGCTCACTGAAGTCAGCATCAGTGTCCAGGGGAATCAGTGCATGCTTCAGATGGCTCAGGCTCCTGGACTGAACCATATCCTGGGTAAATGGATGAGTCTCCCTGCTCTACAGACAGCCATGAGACGCGCCGGAGTCAACGTATTCGTTAGCGAGTATTCGGATAAGTACGTTACAGTCAGTGCCAAGGACCCGCTGATAGAGCACGCGGCGTACGAGCAGATGGCCTTGGTGTCCTCAGCTTTTGCTTTTTCTCGGAGTCAGTGGAACGCTCAGTGCGGACAGGAGCATCTCGTTcttcagGCATGCGAGCACCTGGAGGCGGGGCCTGTGCCagaggaggcgtggtctctgtacTTGCTCGGTGCTCAGAGGAGTCAGCGTTTGAAGATGACCGAAAAGAGTGACGGATTCTCACCGGAGCTGGCCGAAGAAACCGAGTTCCACTCCACTTTTCTGCACATGCTCAGAGACGGTGTCAGCCCGGAGGGGCGGGACAAATTAGACCACACCCACTACCTTTTCATTGATACGGTGCAGAGACTGCTGTGTGCCACCCGCTTGCTCACCTTctcctgatctctctctctctctctctctctctctctcacacacacttatatttCACCAAACTGAACACATACATCTTCAtttaacatcacacacatctttttctttttttaatcgaTATTCTTTAGAGTAAATATTAAACGATTTGTCTCTAATAGCTTCAATTCCTAGCACATTAACAACTGTTTCCAGACATGTGAACCTTTTTAGCACCCTAATCgtgcttaatggtatttttaattgcttatgtgtatatatttttatatccgTTACCCGATTTGTGAAGCTCAACAACCATCTAAACTGTTTGCAGTTAAACTTCTTTGTTTTTGCCCATGGTAATGCCTGACAAAcggattttacatgtgtgtttataattttatatagaaAAAGGACAGCTACAGGCAGCTACAGAGCTCCTGAGGActaagatgaaaaataatacacttttcaagaattaatttgtttgcatttctttaaaatgttgctTAGGAACATCAGTCATTTTGGAACACGTCTTTGAGATACAATGCTATTGAGTGGAAATTTAAAATCGTGTatattgctcatttttatgaagggtgctgATAAATCTGGAGAGC

Function

GO: NA

KEGG:

id description
K17580 CASC1; cancer susceptibility candidate protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328477 lncRNA downstream 46246 5358451 ~ 5359228 (-) True G277066
TU328476 lncRNA downstream 47270 5355900 ~ 5358204 (-) True G277065
XR_004579974.1 lncRNA downstream 78760 5315907 ~ 5326714 (-) True LOC117599571
TU328395 lncRNA downstream 279996 5124473 ~ 5125478 (-) True G276985
TU328390 lncRNA downstream 294506 5106880 ~ 5110968 (-) True G276980
TU328891 lncRNA upstream 28094 5447151 ~ 5448687 (-) True G277443
TU328897 lncRNA upstream 140877 5559934 ~ 5560268 (-) False G277447
TU328898 lncRNA upstream 140877 5559934 ~ 5560322 (-) True G277447
TU328954 lncRNA upstream 239427 5658484 ~ 5727420 (-) False G277494
TU328966 lncRNA upstream 242754 5661811 ~ 5663019 (-) True G277506
XM_026923526.2 mRNA downstream 43495 5339773 ~ 5361979 (-) True bcat1
XM_026923349.2 mRNA downstream 89567 5080812 ~ 5315907 (-) False sox5
XM_026923347.2 mRNA downstream 89567 5080812 ~ 5315907 (-) False sox5
XM_026923346.2 mRNA downstream 216959 5080812 ~ 5188515 (-) False sox5
XM_026923350.2 mRNA downstream 216959 5080812 ~ 5188515 (-) False sox5
XM_034313035.1 mRNA upstream 45256 5464313 ~ 5487007 (-) False parpbp
XM_034313034.1 mRNA upstream 45256 5464313 ~ 5487003 (-) False parpbp
XM_026922759.2 mRNA upstream 45256 5464313 ~ 5486990 (-) True parpbp
XM_034313041.1 mRNA upstream 95025 5514082 ~ 5528820 (-) True th2
XM_026923147.2 mRNA upstream 110099 5529156 ~ 5550953 (-) True pah
XR_004579951.1 other downstream 421159 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 433229 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 666475 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 818482 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 828436 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 562081 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 563235 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 613972 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 684019 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2174670 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile