RNA id: XM_034313041.1


Basic Information

Item Value
RNA id XM_034313041.1
length 1687
RNA type mRNA
GC content 0.53
exon number 13
gene id th2
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5514082 ~ 5528820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTCGTTTGATAACCGCTGGCTTTTTAGGCTTCTTAAAATGGAAGAAAGCGCAGACGCGTGACGCAGCGCTGCGCACATGGAGTCGCGCTCCTGCACCGCATTTCCATAAAGACCTCACGAGCTGCTGGTGTATATAAATCGCTTGGTACATGACAGGACACGGGGAGAAGCCTAAAGCCAAGAGCTAGCTGAGAGAATTATAGAGGCGTGAGATGAAGACGGAGAGCGTGGCGCAGAGTGTGCCTTTCAGCGGCAGAAAGCAGAGTCTCATCGAGGACGCgcagagagagagagacagggagagagacagggagagcaCAGCTGCGTCTCCGGGTCCATCGCGCAGCGGCGACAACTTGGTTTTTGAAGAGAAAAGCGGTAAAGTTACTCTGCACCTGCTCTTTACGCAGAAGAACGACAAAAATGCTGGATTCTTCAAGGCTGGGAAAGTCTTCGAGaCCTTTGAAGCAAAGCTGCTCCACCTGGAGAGTCGTGCAGCCCGAAGGTGTAAGAAAATGTCCTCAGATGAGCTGGAGTTCTTCATGCAGTGCGAAGTTCACAGCTCAGACACTGACACCTTCATTAACGCGCTCAGAAGAGTCGCAGATGAAGTGCGGCTTCTGCAGGACGAccgggtTCCATGGTTCCCACGAAAGATCAGCGATCTGGACAAATGCAATCACGTAATTACAAAGTACGACCCTGACCTGGACCAAGATCACCCTGGATATAGCGATCCGGAATACAGAAAACGGAGAGCGTTTATCTCTGAACTGGCTTTCAACTTCAAACAGGGCGAGCCATTACCCTATGTTGAATATACTCCAGAAGAGGTTGCCACTTGGAGAGAAGTGTACAGGACTTTGTCCTCCATCTATCCGTCGCATGCGTGCAGACAGTTCCTGGATGGCCTGCAGCAGCTGGAGAAAGAGTGCGGCTATGGAGAGCACAAAGTCCCTCAGCTCAGAGACGTGTCCAGTTTCCTGAAAGaaaagacAGGCTTCCAGCTGCGCCCAGTCGTGGGCTTGCTGTCGGCGCGGGACTTCCTGGCGAGTCTGGCGTTCAGGGTGTTCCAGTGCACGCAGTACATTCGCCATTCCTCATCACCCATGCACTCTCCAGAGCCGGACTGCTGTCACGAACTGCTCGGACACATCCCCATGCTCACGGACAAGGAGTTCGCTCAGTTTTCACAGGAGATTGGTCTCGCTTCTCTTGGAGCATCTGATGAGGATATAGAAAAGCTGTCTACTCTCTACTGGTTCACGGTTGAGTTTGGGCTCTGCAAGCAGAACGGCGCAGTAAAGGCGTACGGTGCTGGACTCTTATCCTCCTACGGAGAACTTTTGTACGCGCTCTCTAATGAACCCGAGTACAAGCCGTTCGTCCCTGCTGAGACAGCGGTCCAGCCGTACCAGGATCAGACGTACCAGCCCGTGTACTTTGTCTCCCAGAGCTTTGAGGATGCTACAAACAAGATGAGGCAGTACTCCTCCACCATCCAGAAGCCGTTCTCCATCAGATACGACCCGTACACCTGCTCCATGGAGATCCTGGATGACCCGGCTAAGATCCAGAGCGTTCTGGGCCGAATGAGAGAGGAGCTGAAGATTCTGCACGGTGCGTTAGAGAGACTGGGCCAAAGATGAGCCTGAAAGCCTGGTTCATCTTTCATCATGCGTTAA

Function

GO:

id name namespace
GO:0042423 catecholamine biosynthetic process biological_process
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0004511 tyrosine 3-monooxygenase activity molecular_function

KEGG:

id description
K00501 TH; tyrosine 3-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328891 lncRNA downstream 65395 5447151 ~ 5448687 (-) True G277443
TU328477 lncRNA downstream 154854 5358451 ~ 5359228 (-) True G277066
TU328476 lncRNA downstream 155878 5355900 ~ 5358204 (-) True G277065
XR_004579974.1 lncRNA downstream 187368 5315907 ~ 5326714 (-) True LOC117599571
TU328395 lncRNA downstream 388604 5124473 ~ 5125478 (-) True G276985
TU328897 lncRNA upstream 31114 5559934 ~ 5560268 (-) False G277447
TU328898 lncRNA upstream 31114 5559934 ~ 5560322 (-) True G277447
TU328954 lncRNA upstream 129664 5658484 ~ 5727420 (-) False G277494
TU328966 lncRNA upstream 132991 5661811 ~ 5663019 (-) True G277506
TU328968 lncRNA upstream 140748 5669568 ~ 5670534 (-) True G277508
XM_034313035.1 mRNA downstream 27075 5464313 ~ 5487007 (-) False parpbp
XM_034313034.1 mRNA downstream 27079 5464313 ~ 5487003 (-) False parpbp
XM_026922759.2 mRNA downstream 27092 5464313 ~ 5486990 (-) True parpbp
XM_034312990.1 mRNA downstream 95025 5405474 ~ 5419057 (-) True casc1
XM_026923526.2 mRNA downstream 152103 5339773 ~ 5361979 (-) True bcat1
XM_026923147.2 mRNA upstream 336 5529156 ~ 5550953 (-) True pah
XM_026923579.2 mRNA upstream 36857 5565677 ~ 5625699 (-) True LOC113532275
XM_026922794.2 mRNA upstream 256090 5784910 ~ 5790989 (-) True si:dkeyp-38g8.5
XM_026922873.2 mRNA upstream 460372 5989192 ~ 6005129 (-) True copg2
XM_026923550.2 mRNA upstream 481470 6010290 ~ 6011543 (-) False ucn3l
XR_004579951.1 other downstream 529767 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 541837 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 775083 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 927090 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 937044 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 452318 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 453472 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 504209 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 574256 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2064907 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile