RNA id: XM_034313065.1


Basic Information

Item Value
RNA id XM_034313065.1
length 6230
RNA type mRNA
GC content 0.55
exon number 42
gene id sbf1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8488152 ~ 8548628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGCGCGCGTGGCGCCGCTGTCAGGGCACGGCTCAGCTACAGTATGGCGGCGAGCTGCTGCTGGAAGGATGCTGCTGTCGCCCAGCCTGCTGTTTGTGCTGCTTTCAGAATGTGAACGGAATATCCATCGCGCACGGAAAGTGGACAACGAGAAAGGCCTGTAGCCCCGGAATCGAGGATGGCCAGGCTTGCGGATTATTTCGTCGTGGTCGGCTACGATCTCGATAAGagggGGGGAAGTGAAGGTCAAGGCCGGATCCTCCAGCGATTCCCAGAGAAGGATTGGGAGGATAACCCCTTCCCGCAGGGCATCGAGCTGTTCTGTCAGCCCAGCGGATGGCAGCTGGTCCCCGAGCGACAGCCTCCCTCTTTCTTCGTGGCCGTCCTCACAGACATCAACTCAGAACGCCATTACTGTGCCTGCTTCACCTTCTGGGAGACTGTAGATAACCctcagttacagAAGGAAGAGCCCAGCGAGgcagatgaagatgaaagcCCTGATCTCATACAGCCAGCACAGCTCTACGCCCCCAAGAGCCTGGTTGTGGTGTCCCGCCTGGACCACACCGAGGTGTTCAGgAACTGTCTGGGACTCATCTACACCGTGCACGTGGAGCACGTCAACGTTCCGCTGGAAACAGTGATCGGGAATCTCCTGACCTGCATCATTCCCATTGCTGGAGGATCTCAGAGGACCATCACCTTGGGGGCGGGAGACAGGCAAGTGATCCAGACACCCATCAACGACTCACTTCCTGTGAGTGGCTCCAGCGTGGCCCAGCTCTTCAGGCAGCTCGGTATTGTGAATGTTCTCTATCTGTTTTGCGCTGCTCTCACGGAGCACAAGATCCTCTTCCTGTCCAAGAGCTACCAGCGGCTCACAGACGCCTGCCGAGCTCTGCTGGCTATCATGTTCCCACTcaaatacagCTTCACCTACGTCCCCATCCTGCCCGGGAAGCTCCTGGAAGTCCTCAGCACACCGACACCCTTCATCATCGGAGTCAACTCCTTCTTTCGCTCAGAGACGCAGGAGCTGTTGGACGTGATCATTGCAGATCTGGATGGAGGCACCGTGACGATCCCGGAGTGTGTCCACATATCTCTGCTGCCTGAGCCTCTTCTGCAGCATACACAGACGGTCCTCTCCATGGTGTTGGATCCGGAGCTGGCGGTGGCAGATCATGCCTTCCCTCCTTCCTCCACACAGCCTTCTGCACTAAAGATCCAGGACAAAGAGATCCGTGCCATATTCCTGTGGCTCTTTGCACAGCTCTTCCAGGGATATCGCTGGTGTCTGCATATCATCCGTATTCATCCAGAGCCGGTCATTCGCTTCCATAAGGCTGCCTTTCTGGGCCAGCGAACTCTCTCTGAGGACGACTTCCTGATGAAGGTGCTGGACGGCATGGCGTTTGCGGGCTTCGTGTCAGAGAGAGGCCCGCCTTACAGGACCACAGATCTGTTTGATGATCTCATTGCCAACCAGGTGGAGAGGATCCGTCAGGAGCAGAACGATGTGGACAAAGTGTTGAAGCACACCAAGGAGCTGGCTGAGCAGCTCTTCAAAAACGAGAACCCGTACCCTGCAGTAGCCATGCACAAAACCCAGCGGTCAGTGGACAGCCATCAGTCTCAGCCTCCTGTCTCCCAGACCCCCTTCCCGCTCCTGGATGAGGTCGCCGTCCAGCTGTTCATCGATCACGCAGCTGCTAAGCTCAAAACGGCCCCTCCTGTGGTCAAAGCTGAGCTGAAGGAGATGGTGCCCTCAGGACCTCCACTGGCTGATACCATGGACAGAAACGGCAGTGTCCTAGCGAACAGTGCCCGGAGGCTGGAGGTAGTCAGGAACTGCATCATGTACATATTCGACAACAAGATGCTGGAGGCCAAGAAGttgatGCCGGCGGTGTTGCGGGCGCTGAAAGGGCGTGCAGCTCGTGTGTGTTTGACTCAGGAGCTGAACCAGCATGTGCTGCAGAACAGAGCTGTGCTGGATGACCAGCAGTTCGACTACGTTGTGCGCATGATGAACTGCACGCTGCAGgaCTGCTCTCACATGGATGAACATGGCATTGCAGCAGCTCTCCTGCCCCTGGTCACTGCTTTCTGTCGGaaacTTGGTGGAGGCATCACTCAGTTTGCTTACAGCTGTGTGCAGGAGCACATGGTGTGGACCAACATGCAGTTTTGGGAGGCCATGTTTTACAGCGATGTGCAGAATCATATCAGAGCTCTGTATCTGGATATAGAAGACCAAGCCACAGTCAGCCCTaATGAGGATGGTGTGGGCAGGCCAGAGCAGTTCGGCGCTCTGGAGTTGGCGTCGGAGGAGACGCGCCTGTGGCCCACGCTGAGTAAAGAGAGTCAGCAGGAGCGTGTTCAGAAAGAGGAGAGCACCGTGTTCAGCCAGGCCATCCACTACGCCAACCGCATGAGCTACCTGCTGCTGCCGCTCGACACCAGCAAGAACCGGCTGCTGCGCACCACCGGCCTGGCCGAAGTGGAGAGCGTCAGTAACAGCTTTGTTACCAACAGcatcgCTGGCAGTATGGCGGAAAGCTACGATACAGAGAGTGGTTTTGAGGATGCTGAGAGCTCAGACGTGGCCAATTCAGTGGTGCGCTTCATCAACCGCTTTGTGGATAAAGTGTGCAATGAAAGCGGAGTGACCAACGAACACCTGAAGGCCCTTCACATCATGATACCAGATATCGTTCAGATGCACATCGAGACGTTGGATGCGGTccacagagagagcaagagactgCCTCCTATCCAAAAGCCCAAGCTGCTGAGGCCGACTCTGTTAGCAGGTGAGGAGTTTGTGATGGACGGCATGCGTGTGCATCTCCTGTCAGACGGCCGAGACGAGGCCACGGGTGTGATGGGCGGTCCGCCCCTCCTGCCCGCCGAGGGTGCCATCTTCCTCACCACATACAGAATCATCTTCAAGGGCACGCCCAACGATCCTCTGGctGCAGAGCAGATTGTGACGCGCTCTTTCCCCATCGCCTCCCTCACTAAGGAGAAGAAGTTGAACTCGATGAGTTTACCCATAGACCAGTATATTCAGGAAGGCCTGCAGCTCCGCTCCTGTACCTTCCAGCTGATGAAGATAGCGTTCGATGAGGAGGTGGCGTCAGACCTGGCCGAGGTTTTCCGGAAGCACATGCACAAACTGCGCTACCCCCAGCACGTTCACGGCACTTTCGCCTTCACCGTGGGTCAGTCGGCCAAGATGGTGGTGGAGCACAAGACCAAGGACAAGAACCAGTCTCTAAAAACCCTCTCTAAAAATCTGGTGAAGAGCGCTAAGAAGACCATCGGACGACAATACGTGACCCGGAAGAAGTACACTCCTCCGAACTGGGAGCACCGTAGTAGTCTGCAGTCCGAAATGGATGAAGACGAGATCTCggtgtctGAGGAGCTGGAGCAGAGCTCGCTCACGCTTTCCTCCACCATCCGCTCGTCCGACCGCCAGACCATGAGCAACGTAGTGGAGCGCGCTTGTTGTCGTGACTACCAACGGCTGGGTCTGGGCACGCTCAGTAACAGCCTGACACGCTCAAAGAACGAGCCTTTCCGCATCTCCACTGTCAACCGCATGTACACCATCTGCAGGAGttatCCAGGCCTGCTGATCGTACCTCAGAGCATCCCTGACTCGACGCTCCACCGCATCTCTCGCTGCTACAGGCAGAGCCGCTTCCCCGTGGTGTGCTGGAGGAACCCGCGCACTAAAGCCGTGCTCCTGCGCTCGGCCGGTCTGCACGCCAAGGGAGTCGTGGGATTCTTCAAATCTCCCAACGCCCCCAGTGCAGgtcccTCTCAGGCTGACTCCACCAGTCTGGAGCAGGAGAAGTACCTGCAGGCCATCATCAGCTCCATGCCCTCCTACAGCGAGGCCAGTGGAAGAAACACCCTGAGCAGCTTCACGTCCATGCACATGAGCGCCTCAGACTCAACCGACAAACTGAGACAACCGAAAATTGGAGCTCTTATGAAGCAAGTTATGGGCACTAAAGAGGATGTGCCTGGAACCTTCAGTCGAGGAGCGCTGGGTCAGAGGGCAAAGGtcatctccctctctcagcCTAAGGTTTCAGTCAAGGCCCGCAGCTCACCCCGAGggAAGTGGGGCAGTATCCGGGGCAGCGGGCGTCTCACTGGCTATAATCCTGAAGTGGGGAACCGGCTAGCAGGGAAGGACTCCCCTCAGGTAAACGGCGGGCCTACTGAGCCATACTTCCTCCGCCAACAAAGAGCGTATCTCTACATCATCGGGGACAAGAACCAGCTCAAGggaggAAAGCAGGACTCGTTCCAGCAGTGGGAGGTGGTTCCCATCGAGGTGTTCGACATCCGGCAGGTGAAGAACAGTTTTAAGAAGCTGATGAAGGCCTGCGTTCCTTCCTGTCCTTCCTCTGATCCCAACATGTCCTTCCACCGCTGCTTAGAGGAGTCTGAATGGATGAATCTGcTTCACAGGCTCCTTCAGGTGTCTGTTCTGGTGGTGGAGTTATTGGACACCGGCTCCTCAGTCATGGTCAGCTTGGAGGACGGATGGGACGTCACCACTCAGGTGGTGTCTCTGGTGCAGCTGCTGTCAGATCCGTACTACCGCACATTTGATGGCTTTCGGCTGCTGGTGGAGAAGGAGTGGCTGTCATTCGGCCATCGCTTCAGCAACCGCGGCGCTCAGACGCTGGCCAGCCAGAGCAGCGGCTTCACGCCCATCTTCCTGCAGTTTCTAGACTGCGTACACCAGATCCATCATCAGTTCCCTATGGAGTTTGAGTTCAGTCAGTACTATCTGAAGTTCCTGGCTTATCACTATGTGTCTAACCGCTTCCGGACCTTTCTGCTGGACTCTGATTACGAGCGTATAGAGCTGGGTGTTTTGTATGaggaaaaaggagagaggaagaacCCTCAGGTGTGTAAGTCTGTGTGGGATTACATCGACCGTCTGCACAAGAAGACCCCCATCTTCTATAATTACATGTTCTCTCCAGAAGAAGAGGAGGTCTTAAAGCCGTACAGTTTCATCTCCAACCTGAAGGTGTGGGACTTCTACACGGAGGAGACGCTCTCGGAGGGGCCGTCCTACGACTGGGAGTTGGTGCGGGGGAAAACCGAGGGGCTGGACGAGGAGAGAGCCGAGACGGCCGCGCCTAAGTCACAGAGGCAGGTGGTGTGGCCCTGTTATGATAACCTGAGCAAAGTGGTACCGGACGccatcaccaaactgctgcaggatgtGCAGAGCCTTGAGGCTGAGCTTGGACACACCTCTGAGAGATGGAAGGAGACATGGGATAAGATAAAGACCACGCAACGCACCGAGACCAAACTGGAGAGTCGGcCCTCGTTCTCCAGCTCGCTCCTCATGTCGTCCAACCTTACCCACCAGAGGCGCACTCAGGGCATGTACCTGCAGGAGAGCGGTGTCGGCTCCTCCATCAACCTGGCGCTGGAGTGTGAGGCCAGTGCCACCTCCACACCCGCCACCAGTCGCACCAGCACCAGCACGCTCTACTCCCAGTTCAGGAGCACTGAGAGCGAGAACCGGAGCTTTGAAGGAATTTTATTTAAGAAAGGAGCTTTGCTGAAACCTTGGAAGCCACGCTGGTTTGTGCTGGACAAGACCAAACACCAGTTGAGATACTACGACACGAGGCAGGATAAGGAGTGCAAGGGGGTTATTGAACTGGCGGAGGTGGAGTCTGTCATTCCGGGCACTCCTGCCATGGGAGCCCCAAAAAATGTAGAGGAAAAAGCCTTCTTTGATcTAAAAACGACCAAACGAGTGTATAACTTCTGTGCGCAGGACAGCCAAAACGCACAGCTGTGGATGGACAGTATTCAGAGTTGCCTATCTGATGCATAGATGAGGGACGGGCCTGTGTATGTATGGAAGAGAGACTTTACTGTGACTGGACACATGGGTGATGGCCGTGGCTCTCAGCCAACGATGGCGTAGAGAGAAAACGGCGTTgatcttataaaaaaaaattgcacctcaccatatttcagtgtttttgtataaacaaatgacaaaaagcaagaaaaaagccTAAACAAAGAATTCCCTGAAAGACTGACATGGACATGAGTAGTCTAACCACTATTTACACCTCCTGGATGTTCTCTTGTGCTCTGTGGATACGAGGTATGGCgtcaataataaaaatctctTGCTCCCTTTCTTCCTTCCAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330707 lncRNA downstream 97593 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 248476 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 270859 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 520731 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 609135 7796835 ~ 7879017 (-) True G278520
TU330836 lncRNA upstream 63490 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 149802 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 644988 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 787708 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 837505 9386133 ~ 9387789 (-) False G279592
XM_026923584.2 mRNA downstream 5581 8473937 ~ 8482571 (-) True parp12b
XM_026923144.2 mRNA downstream 16258 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923142.2 mRNA downstream 16258 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923141.2 mRNA downstream 16258 8443209 ~ 8471894 (-) True si:dkeyp-27e10.3
XM_026923145.2 mRNA downstream 48356 8429495 ~ 8439796 (-) True svopl
XM_034313254.1 mRNA upstream 78293 8626921 ~ 8633955 (-) True hsp90b1
XM_026922697.2 mRNA upstream 618961 9167589 ~ 9188935 (-) True tspan12
XM_034313077.1 mRNA upstream 618961 9167589 ~ 9188122 (-) False tspan12
XM_026922951.2 mRNA upstream 740467 9289095 ~ 9291409 (-) True parietopsin
XM_026923675.2 mRNA upstream 790140 9338768 ~ 9347046 (-) True LOC113532331
TU330637 other downstream 268472 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 420075 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 894344 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2385005 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2454959 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 260592 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 658723 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1073905 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1721129 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2446477 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile