RNA id: XM_034313107.1


Basic Information

Item Value
RNA id XM_034313107.1
length 2221
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC117595727
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 663725 ~ 683075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCTGGTGATGGTAGATGTGATCATCAGTGTTCCTGACTAAAATCTCAGtgCAAACTGCTGGGCGGAGATTACTGTGATTCCCCACCCGTACTGATTTAATAAGTTTCTTCTCCAGGTGATCTTTCCTGAGCAGAGAAATGAAATCAGTGGAGAAACTCATCATCTTTTATTCTCTGTTTCAAGgtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTGAAGAACAATTTGATGCAGACCTCAAGGCAGATCTTACAGGAATCTGGTTTAAAGATGGCACTAACCATAACTATAACCAAGTCTTTAACTCCAAAGAAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGAATAGAAACTTcaggaaaactgaaaaacacttATAGATCTTCATCAGTAGATATAAGAGTGCGAGtCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCCCTCTAACCTCCTCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGATTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAATGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAGCAAGACTGATTctacacacagtggtttataCTACTGTAGAGCTCAAAACCAGCTCGGAGATCAGAACTCATCTGTGTACctggatgttcagtatgctCCTCGGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATATGTTTCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCATGTCTCTGGTCAATATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCTTCATCTCCATCCGTCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGATCATCACTCTGCTAAAGatGCTCCTCAGGTCTCTCCCTTCTCCAGCTGTAACAGCACTCAGGATTTGATCATGTGTTCCTGTGAGGCTCATGGAAATCCATCTCCTAAACTGGAGTGGCGTGTCTCTGGTCAAAATTCTTCAACCACCAGAGAAGAGTCTGTGAACAACACAACCTCAAGAAGCCTCATCTCCATCCATCAATCATTTACGGACATGCTCACTCTGCAGTGTGTTGCCTCCAATAACCTGGGCATTGACACCCAGCTCTTCTACTTTAAGAAAGTAGCTCATCACTCTGCTAAAGgttCAGGTGTGGATATTTCCTCTGTGCTGATTGGTGCAGCTGCTGGAGCTTCAGTAATGATGATGTTGTGTGGTATATTcctgtgtgtaagGAGAGTGAGTCCTTCCCAGTGTGGACAAAGAGACACAGCAGGACTCGTTTTAAATGACAGGGCTGTTCGACAGGAAGAAGACGGAGAGTCTGTGTATGCGAACAAACAGGTTTCATCAGAGTCGCTTCATTACTCCACTGTTGTGTTTCCAAACAGAGATGGAAGCGAAATCAAAGGCATTTCCTCTCTCACTACCGAATACGCTACTGTGCATCACGGCTCCAAACAGCAAAATAAGGGAAGAATTACAGAAACTGGGGCTAAAGAAAGAGATATAGAGCATCTCAAACAGTCAGATGGAGTGTTTACACTCGGATGGCGTCCTTTAAGTCCTTTATAAGTTAAACCTCATAAATGTGAACAGAAGGTGTGAAAAAATCTCATTGTTTAGtaaaacgacaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579934.1 lncRNA downstream 130107 532826 ~ 533618 (-) True LOC117599521
XR_004579905.1 lncRNA downstream 132985 530099 ~ 530740 (-) True LOC117599492
TU326075 lncRNA downstream 145683 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA downstream 145683 514984 ~ 518042 (-) False LOC113532194
TU326078 lncRNA downstream 145683 514984 ~ 518042 (-) False LOC113532194
TU326100 lncRNA upstream 20256 703331 ~ 704000 (-) True G275167
TU326102 lncRNA upstream 20256 703331 ~ 704306 (-) False G275167
TU326103 lncRNA upstream 20695 703770 ~ 705100 (-) True G275168
TU326104 lncRNA upstream 25256 708331 ~ 718266 (-) True G275169
TU326105 lncRNA upstream 35370 718445 ~ 719883 (-) True G275170
XM_034313106.1 mRNA downstream 34721 560707 ~ 629004 (-) True LOC117599466
XM_034313118.1 mRNA downstream 138700 516562 ~ 525025 (-) False LOC113532194
XM_034313113.1 mRNA upstream 2961 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA upstream 2961 686036 ~ 694483 (-) False LOC113543469
XM_034312963.1 mRNA upstream 222172 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 224155 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 492235 1175310 ~ 1177234 (-) True LOC117599470
XR_004579923.1 other downstream 32338 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 51774 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 62696 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 76907 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 124427 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 186915 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 449013 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 599379 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 611065 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 705121 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile