RNA id: XM_034313114.1


Basic Information

Item Value
RNA id XM_034313114.1
length 1774
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC117599468
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 422513 ~ 475215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAACTGAGGACACTTCAGTTTGAGAACTGGAGACTCGAACACACTCAGtctctTCTCCAGGTGATCTTTCCTGAACAGAGAGATGAAATCAGCAGAGAAACTCATCATCAtcgtttgttttctgtttcaaggtgTTTTGTGTAGAGAATTCTCCATCAGTCTACCACAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTAAAGAAGAATATGATGCAGACCTCCAGACAGCTCTTACAGGAATCTGGACCAAAGACGGCACTGACCATAAGAAAAACAAAGTCTTTAACTCTAAAGTAACTAAAGAGAACAAGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAacatcagtgagagagacagtggaaGATATTACTTTAGATTAGAAACTTCAGGAAAACTGAAAATAACGTATACTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCTCTGCTCCAGCTCCATGTCCCTCTAACCTCCCCACTTTTACATGGAACTTCCTGCCTGAGGAGAGAAGACAGGAGCAGAACTACAGCACCAACTTCAGTTCCTCTCAGCTGAACTTCAAAGCCACTCACCTGCATCATGGAGTCGATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGACCAAATCAGCACAGAGGTCTTTTACACTACATGTTCTGTatgttcCTCAGGTCTCTCCCTCCTCCAGCTGTAACACCACTCAGGATCTGATCCTGTGTTCCTGTGAGGTTCATGGAAATCCATCTCCTAAACTGGAGTGGCGTCTCTCAGTTCAAACTGTCCTGCCGTCAGAAGCCACGCCCATCCAAGTGGAGTCTGTGGGCAACACGAGTTTAAGAAGATCCAGTGCGTTTTCCATCCCTCAGTCAGTTAAGGACACGCCCACTCTGCAGTGTGTTGGGTCCAATAATCTGGGCCACGCCTCTCAGGTCTTCTTTATAACTAAGGCTCAGAGGCCTGCTGAAGaacacactgcagtactttATCTggttctatctctctctgtggttctccttctgtgtgttggtgttattggATTTCTCATCTACAAATTAAAGCAATTGTCCAGGAAAATAAAGGTTCTACAGACAGGAGATACTTACgcttctctccagctctctgctGTACAGAACTCTGATTATGAAACTCTGCAGACTAACAGAGggaggagagaaaaaaaggacaacTCCTGAAAAGCTGCACTTTTTCATCACTTATTTTTCTGCCAGTAAAATAATTACCATTGAAGAATATTAAAGATATAaaggaatgtgctgttatacaatttatcagtttatagtcacatgtaatgttgtggaactttgatgaaacaagttagtttctgttcccagttacattatagcagttataaacttGTTTACATGCAAGTTAACTAATAATGTTTGGCTAACATCAGCATCAGTTAAATCACATGTTTGATATTTAAGTAGCTGATATAGCATTTGCATTAGCCTTAATTAAACCACATAATTGCtatttttacagtgtagctACCATAAACATTTGGTAAATCACTTAGTTGCTACTATAACTGCTGTTTTACTTTTAATGGGCCttgtttatatttcagtaaagttgtgttaatatttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325947 lncRNA downstream 57489 362349 ~ 365024 (-) False LOC113531599
TU325941 lncRNA downstream 75064 347214 ~ 347449 (-) True G275049
TU325911 lncRNA downstream 129917 291650 ~ 292596 (-) True G275024
TU325909 lncRNA downstream 135489 285815 ~ 287024 (-) False LOC113535352
TU325917 lncRNA downstream 137282 250671 ~ 285231 (-) True G275029
TU326041 lncRNA upstream 12577 487792 ~ 488922 (-) True G275126
TU326075 lncRNA upstream 39769 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA upstream 39769 514984 ~ 518042 (-) False LOC113532194
TU326078 lncRNA upstream 39769 514984 ~ 518042 (-) False LOC113532194
TU326079 lncRNA upstream 39769 514984 ~ 518042 (-) False LOC113532194
XM_034312958.1 mRNA downstream 28260 376457 ~ 394253 (-) True LOC117599422
XM_034312957.1 mRNA downstream 53476 354974 ~ 369037 (-) True LOC113531599
XM_034313069.1 mRNA downstream 135461 281434 ~ 287052 (-) True LOC113535352
XM_034313037.1 mRNA downstream 168668 248336 ~ 253845 (-) True LOC117599453
XM_034313090.1 mRNA downstream 263231 134189 ~ 159282 (-) False cmah
XM_034313115.1 mRNA upstream 6359 481574 ~ 570011 (-) True LOC117599469
XM_034313120.1 mRNA upstream 41347 516562 ~ 525025 (-) False LOC113532194
XM_034313121.1 mRNA upstream 41347 516562 ~ 525025 (-) False LOC113532194
XM_034313118.1 mRNA upstream 41347 516562 ~ 525025 (-) False LOC113532194
XM_034313117.1 mRNA upstream 41347 516562 ~ 525025 (-) False LOC113532194
TU325948 other downstream 53479 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 168696 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 276473 144583 ~ 146040 (-) True G274979
TU326084 other upstream 61231 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 107983 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 122199 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 133788 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 153849 629064 ~ 631387 (-) True LOC117599510

Expression Profile