RNA id: XM_034313224.1


Basic Information

Item Value
RNA id XM_034313224.1
length 7828
RNA type mRNA
GC content 0.51
exon number 59
gene id cfap54
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19633422 ~ 19664949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATGGTAACGCGGATATAAAATGGAGCCTTTACCTGCTTCATATTATGGAGCTTTAAATCAATCTAACCCTGTCATTGCCGCATTTGAGAAGGATTTAAAAGAGTTTAAATCGTATATGAGAAGAATTCGTGATTCTCTAACTTTCGACCACTTTTCTTATTCAAGAGGGTCTTTGAAACTGTTTGACATCTGGAGGAAATATGAACCTCGTCTCCCTGGACCTTATTACGAAGAGCATCTGCTGGACATTGCAGATTTTCTTTTCGAGAATAAATTTTACAGATTGGCACTGTGGCAGGGATACAGACGCTACCTACAGCGGTTCTCCCCTGCTAGCTTGGAGAACATCAGGAATGTGGAGCAACTCAAGCAGGCCTTCTTCCCACATGGCTTTCATACTGCAGGAGCAAAGCTTACGctcCGTGCTCTGTATGGCGAATGCTTGTGTGCTTTCTACTTGGAACGCGAGAGGTGCAAGCAGCCAGATTGCATCGGGATGCAGAAACTTCTTAGCGTTCTCGCGTTTTTGCGCATCACGATGCAGGCCATCCTGCCCCATGAGAGCCTGTGCTGGATGGTGTACAATGGTTCTTTGTACATCTATAGCATATGTAGGTTCTTGATGTCCGTGAGTCACTCTGCACAGGCTCTGGAGTATTTACTatgggcatgtgtgtgtctggagaCATCCATCCCACTGCTCATTCCCAGTTTCCTGCCCTGGAGAGCCACACTCTACTGCAGTGTTTGTGAATGTTACTATGATGGCCAGGCTGCTGTGCAGGCAGAGGTGTTTGCTAGACGAGCTCTTGGTAAAATAGATGAACTAGGGAAGCTGGAGAAGTTGAGTGGGTTCCCATCATCGCCGGATACAACGCGAGCCTTTAAAGACGCCACCATCAAAGTTGCAGTCATGGTGTTTAAACGCTCAGTGTATGAATCTCGGAGGAAACCTAAAGGATTTTTCAGGTTGAAACAGAAGGCCAGTCTCAGGGATGGCCAGAATAATCCATGGCCACGTACAACAACTGAGCGCATCCTGATGGAGCTGTTTGAgggaaatgctgctcagttccTGGCGGTGTTGGAGGCTCTGTGGGACAGTTCCCGCAGACCCCTGCAGACTGGCACACCGGATGACCCCGATATACAGGAGGTGGCATTCGAGCTCATGTCAGCTGGCGTCAGCATACTATCCGGAAATGGCGGCTCCTCCGATCGAGTCCGCAATGACAGCCTGCCTTTGTCTCTGAATGCCCTCACTCCGACTTGCACCCTCATGGAGATGGCAGTAGCTGGGGAGAATCAGATTTCAGTGGATGCTGCAGTGAAGTTTGTGAAGCTGCTGTTTAGATATGAGCAGTGGGACGTGTTTTGCAGTCTTTCAGACAATCTTGTGACAGTAGTGTCTAGCCTGGAAGGTCGTCTCTTCCGGAAGGCTGAGTTGGAGCTTACTCTGCTGGAAGCCATGGAGCGTCTCATGTCCACTCAAAGGGTTCGGTCTCTGGGGACCAAAGACCTCATGGCTGAGGTTCAAACTGATAAAGACCAATCTTCAGGGCTAATTAGCATGACAGAAGAGCTCCTAAATCTGGTCCAgactctgcatgtgtgtgtgtgtgaggcagccCAGGATATCAGACCGGATGAGGACCTGGTGCTGGATATTGTACTGTTCCTCTGGGCGAAATGTAAGCCTGTGTTTCAGAGAGCTCAGGCCAGACACTATGACCCAGTATGCTACATGGCCAAAATGGCTTTTCCAGAAAAGTGGGTCCAGACTCTGTTCCTTCTGTGTGAGGTGGCCTTTATGTGTCAGCTGGCTGATATAGACCCGGTGGCAGTGGCTGAGATGACTCTTAGACTGGCCTCAGTGCTGGAGGGCAGTGCAGACTCGCCTCCACTGACCATCCCAACAAAAGACTCAAATGAAGGCAGCAGTCTGCAGTCCACGCCTGTAGAGAAACCTACAGCCACGCCTACTGTGAACTCACAAGCTGAGCATCTTGAGATGGTGTGGACTGTGCTGGAGAAAGGCCTGGAGTGTGTGTCAAGAGGCAGGACTGTATGTCTCCCTCGTGATGCCTCTGCCATCTCTGACACTGTGTACCTACAGAAGGTTAGTGGAGAACATTTGAGATCTTCTGGGGATGGACAGATTGAGACCACTAGCAGTTCACGCATGAGAGCTCTCTCAATGGATATGCATATGGAACTGCTGGCTTTCCAGCACAGAGTATCCCTCAAACTCCTAGACGCCTACCCAGATGATGAGAATCTTGAGGGGAGAAAGAGGCCACTTACGCAGAGTGCACAAGGACAGTCTACTGCTGTACATTCAAAGAAAGCCAGAGCAGAATGTGCACTGCAAGAGAAgattaagaagaataaaatctCCAAAGTTTTGTTTCTGGTGCAGAAGGCCTTACTTTCCTACAAGAAAGATGCTACTAACAGAGGCACCAAAAAGCTGCTTGAGGAAGCTTTGGCTTTACTGGAGAAAGCAGGTGTTGAGGAGAAGCGGCTGGTCagtgctgctgcttctgcagaGATGGGATCAGGAGTGGAAGAAGGGTGTagacctcctccacctcctgtGCTGCTGGCACGTAGCAACCGATCTCTAACTTTCACACCAGCACCATACGTGCTGGAGGAGCAGGTTTGCTGGTACCGTATTTATGGTAGAGAAGTCGAAGGTGTCAACCTGAAAGTGCGGATTGGAGACTGCCACCTGGTTGGCACTGGTGAAACGATTCCTTCTAGAGGAGAACGCTTGTTTTGCATAACTGGCCTGGAGCCCAACCAGAAGTATATCTTTGCTGTGGCAGCCTACGACACTCAGGGCAATCTGATCGGAAGCAGTATTGGAGATACCACCAGGCCGGTGCTAGCTtccctccctcttcctctgTTGACCGCCTGGGCACATCTGGCTCAGGTGGCCTACCAAACAGGCCAGTATGCACTAGCGAAGAAAGCCTGCAGTGAGATTTGGAGCCACTTTACCCTCCCGCCCGTCGCAGACTCTGGAGCCTGTCAGGAATCAGTGGATGAGGAAGCTCCCGAGGGGCTCGCCCAGACGAAATTGTGCCCAGAGACATTGCAGCTCTCATCTCCTCTTCTGCAGCAGCTTTTCCTCACCTCAATCTTTATGCAGACAGACATCCACATCCAGCAGAGAGCACTGTACTGTGACTCCCTCAGTGATGGAAGCCCTTTGATCTGGGGACAGGAGGCTAGACTTGTAGAGTGTGAGAGGATGCTTGTGGCCATAGATCTGTCTCTACATCTCAATGACAGCAGTGCTGCCTTGCAGGCTGTGGTGAGCTGCTATGGCCTCCTGGCACCTCTTATCTTCTATCAGATCCCATCAGACCCTGTGGTTCAGGTGCTGTTGAAGTGTCTGATGGTGCTGCAGGAGATTCCAGCTGCACTCAAACAGAAAAGGCCTGTGGCTACTACTGAATCACTGTATCATATGGTGGCCTGCATCACACACTATGTAGCCAAGGGCTTGCGAGCTTTGAAAGAGGACTGTATGGCATCTTCAGTGATGGAACAGGGCAAGCAGCTCCTACTGGAGATGAGCGAGAGTCTCCAGCAGCATGACAAGatacaGAAACACCAGAAGAAGTCAGTGGCTGCACAGGAGGGTGAACCTAGTGAGGAGCTGAAGGCTTTGACATGTAGTGCTTTGAAGCAGCATGAAAAAATAGGAACAGTTGTAAACTGTGATAAACCAGTCAGGAAGAGAGAAGGTAGAAAACCCAGAGAGAAGGGTCATTCTGTCATTCAGTCAAATCAGGCCGCAGCAGATGGTTTTGATCAGGACCTCAGTGGAGAAGAGAACCGCAAAATTCTGTACAAGGTCATTGGTTCCAGCTCCCTCAGGAATGCCTTCAGAACCGTGATGAAGTTTAAACAGATGTCTTGCTTCATGGAGTTTGCTGCACTCCTGCTGCAGAAAGCTTTGCAAGAGGATCAGTTGGAACTGCTAATACAGTGGGGACGAGAAATCTTCAGCTGGATTaagagCCGAGATGAAAGTTTGATGTTGCCAAAGAAGCCTTACAGGAAATTAAGGAAAGATCAGAAGACGTTCACATCATCTGTCATACAGTActgtaataaaGTAAACAGAGTttataaaaagaagaatgaGTTGCAGAAGAAGATTTCCAGCTCAGAAGACTGTGAGAAAGAGGTCAAGCCGGTGGAGACAATGATGAAACAGGGGGGTTCAGTGAGAAGGCACCAGCGGCGGAGGGTGATGAGGCAGGTCTGCTCAGACGAGTTGCCCTGGCGATGCCGTGCCAACCTGACGCTGGCTCAAGCACACCTGGTTCTGCTGAGCAAGAACTTAAAACTTCATGTTGTAACACCTCTCGAGCTCTGTTACAGCAAGTTTTCTCTGCGCTTCTTCTCCTTGGCACGTACTGGAACACTGGTGAAATGGAATAATATTTCCCAACACACCAAACCTCCTGAGTTGAGCCCTTCAATCCTCAAAGCCACCATTCACAAAGCCAAGGATACCAGTCAGGGAGCACCAGATATGAGTGGAGAGGGGTCTGGGGAAAGTGAAGCGGAGAGTGAGCTGGACACTCCACGCACACAACTGACCAGTGATTCAGAAGGCAGTAAAACACCTGAAACTTCTAGACGCCACATCCTCTTTAAGCCACTGGACACAATCAACAAGGCGTCAGTACACCTCAGGAGAGCCATGGTCTTGGCCTATCGTGGAAGACTTTGGACATCTCTGCAGTGGGTGTGTGAGATCCTTTGGGACCAGTTCAACGCTATTGCATTTCTGGTGGAGTGTAGCCCGAGCTCTGAGACTCCCAGAACACTGACGCTGGATCAGTTCTACACAGTGTTCACACCCCTGCTGGCTCTGGCTTCAGAGCTGCTCATGGACATGATGGAGAAACTGCAGCAGTGGAAGGTGTATGATGAGGAAGGTGAAGAGCTGGAGGCCAGGCCTCTGAATGATGGAGCGCTGGTAGATCTGAAGTGGATGAGGAATTTGGTGTTGCACACACTGGAGCTCCTCTTCTACCAGGCCAAATGGGAAAAACTTGCTCATCTTGCCTTGCTATACAACTTTTATACACAGGAACATTACACTCATATGATAACCCCTGTACTGGTATATGCTCAGAGAAGACTGCTGGAAAGAATAAGCTACTTTGGAGGCCCTTCAGTCCCTCAGCCACACTTCACCTACACAGAGATGGTCACTGGAGAAAAGGTGACCTGTAGGAATTATGCACACAAGCAGCTGCTCTTAAGTTCCAGTATGGAGAGTTGGTGTGAGAGTACAGCAAGCAGTGCTGCCTCAGAACCTCTGGAGGTGGCAGAGAGGAAAAGAGCCATGTGTGTGGTCTCTGTACCGCTGGACATTGATGACACACTGCGTTGTTTCAGAGAGTCCCTGACCAAGAAACGTCACACACTTCGTGCCTTCCAGCACAGCCGCACACTGATCATGGTTCTACTAGCTGACACACAGCACTCAATAGAGGTGCCATTCTGTAAGGAGTCGTGTCATGGCTCACAGGGCAGAGTGGAGTTTAACATAGCAGCCAGCACTGCCCCATCCATCGGTCCTCCAGACCTGTCCAAGGAAGACTTCAACTCTGTGGGCTCTGTGTACAGCTCGCCCCTATCTCCCTCGCACATCCAGACCGTCCTGTCCTCCTATAGCAGCTCTATCAAATACCTTCAGGCAAATAATTATAACTCACTGCAAGTTCAAGCTCTGCATGACCTTGGGAACCTGCATTTCTATAATGGAAATCCAAAGGCTGCTCTCTCACATTGGAGCAAGGCTCTGGACTGCTCCCTGCAGACCACAAATGTGCTACAGTCCTGGGATGGTGATTCATGGGGCCATAACTCCTCTCAACAGCCCCTGAGGCATGCTGGGATATGGGGCTGTTTCCAGGGTGCATTGTTGTCTGCTAAGATTGCTCAGTATATCTTAACATCTAATATAAGCCAACGAACAAACTGCTGCCTTCTCTCCACAAAGCTCtttaagTGTCTGTTGAGGGCGTCCCTGCCTCATCCTGAAAATGATTTGGAATACGCTTCTTACACGCTGAATACGGAGCTCATCCCTGGGGTTAATATCTTCTCAGAGTCGGACCAGACTCTCGTCGGTTGCACTGTGGCCAGCCTGGGCTTTCTGTGTCACTGGCTCTACACCTCAGGACATCAGCTCTCAGCACTTCCTCTTCTGGCTCTTTACCAATATGTAGTCAGCAAAGTGTGTAGGCACCCCCATCTCACTGCAGGATGCAGAATACTGAAGGTAAAGATGTTGACTGAGCTGCGCCTGTTTGCTGAGGCAGTGAAAGAGATGCACAGTGTCAGTGATGGAGAGGAAGTCCCCATGCCTCACAACAGCTACACTAGAGCAGAGAAAGCTTCGACATGGAAGAAGTTCAGTAATTATAAACCTCTCACAGATCCTTGTAATCTTGAGGTTCTGGAGGAGCTGGTGAACAAGAGACCTGGTGAAGACTTCATGGCTTTGTATGGAACCAAACTGACCTGCCGACTCCATCTGGCCAGACTTCAGCTCATCTTGGCCATGTGTAGTACGATTCATGACCTACCTGAGCCATTTACAGAGGTTTTGGAGACACAGGTGAGGAGCTCCATTACCCCCAGCCTGCGCGACTCCAGCAGTGATGGGTCTCCCAGCAGCCCCTCCATGACGAATGAGGAGCCCAAAGacctccagctccagctccaaaAAGACACACTTACTCCAGGACAAGTCAAGGCTCTGCTACTGAAAGAGATCTTCAGCCAGCTCAATTCTGAGCTATTTGCCCTTCAGCACATCCATACAGACCCTGAGGAGCTGGAGCTGGCTGTGGAGATCAGACTGCTGCTGTCCAGTCTCAACCTGCAGCAGGGAAAAGCTGCCTCCAGTGCAGATCAAGCGGCGTCTGCTCTCAGGTTACTGCAGGACTCTCCCTTGCTCCAGAATGAGAGTATCCAACAACTGCCACCCAGATGCCCTTCTTCTGTGCTTAAGCAGTCCAGTACCAGAGCCGAACATGAGCAGCTGTATGAGCCAAAGGCAGATACCGGGCCTCAGCTAGGGGACATGCCCGCTGCAGTGGAAGCTTTAGAGCGCATGGGTCGCTCACTATGGCTCCGCTGCACACTGGCTGTGGTCCAGAGCCTCACTGCTCACATCCCTGGCACTGTCATCTACCCAGgtgtggacagcaGTGCGGAGGCGGACAGATTGATAAAACAAGGCctagctgaggctgaggcctGGGGAGACCCAGACACTCAGGCCCTGCTGCTCCTGCAGGAGGTtgtgctgaacacacactgtggtCGAGCGCCGGAGGAGAACGCCTACATACTGCAGGAGGCAGTAAGTCTGCTGTCTGGCCGTAATACCCTTTCTCTGCATTCTGGTCTGTCCCTTGCTAAGGCCACTCTGCTGCTGAGTGAACTGAGGGGCTCAGATGGTCAGCCGCTTTACTTGCTCACTCAGAAACTACTGCAGCAGCAGctGAAGACACTGGGGGAGTGTGGAGTGCAGAAGGCACTGGGAGACTGGGGCCGCTCTCCACTCCAGCCTGGAGGAACATTTACCGCCCACAGCTCCCTCTACTGGCCAGGACAACTATGCGCTTGGGTCAGTGTTTGGCCCTGCAGGCCATGGTGAGCTCATCAGAAGAGGATGAACAACGCTCGAATCTGTGGTTATTGGCTCAGGAGGAGCTACATTCTGCACTCATCATCTCACGGGCCTCGGCTAGCAGGGACCCCCAGCTGGAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403329.2 lncRNA downstream 45178 19580854 ~ 19588244 (-) True LOC113532316
XR_004579877.1 lncRNA downstream 50469 19580854 ~ 19582953 (-) False LOC113532316
TU337984 lncRNA downstream 72803 19560412 ~ 19560619 (-) True G285331
XR_004579862.1 lncRNA downstream 202863 19429170 ~ 19430559 (-) True LOC117599445
TU337930 lncRNA downstream 224617 19408270 ~ 19408805 (-) True G285289
TU338031 lncRNA upstream 11891 19676840 ~ 19677595 (-) True G285361
TU338029 lncRNA upstream 13551 19678500 ~ 19679275 (-) False rap1b
TU338032 lncRNA upstream 45948 19710897 ~ 19719135 (-) True G285362
TU338109 lncRNA upstream 251660 19916609 ~ 19920334 (-) True G285437
TU338095 lncRNA upstream 288664 19953613 ~ 19960579 (-) True G285425
XM_026923712.2 mRNA downstream 113814 19516354 ~ 19519608 (-) False cbll1
XM_026923714.2 mRNA downstream 113916 19516354 ~ 19519506 (-) False cbll1
XM_034313359.1 mRNA downstream 113916 19516354 ~ 19519506 (-) False cbll1
XM_026923715.2 mRNA downstream 113922 19516354 ~ 19519500 (-) False cbll1
XM_034313358.1 mRNA downstream 113922 19516354 ~ 19519500 (-) False cbll1
XM_026922602.2 mRNA upstream 6576 19671525 ~ 19676383 (-) True mcat
XM_026923047.2 mRNA upstream 13334 19678283 ~ 19735232 (-) False rap1b
XM_026923046.2 mRNA upstream 13334 19678283 ~ 19735232 (-) True rap1b
XM_034313287.1 mRNA upstream 194552 19859501 ~ 19868173 (-) True dyrk2
XM_034313288.1 mRNA upstream 194552 19859501 ~ 19867749 (-) False dyrk2
trnae-cuc_38 other downstream 1421029 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1445424 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1540878 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1542800 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1549568 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 648118 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 757452 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1795877 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1795877 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1795878 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile