RNA id: XM_034313230.1


Basic Information

Item Value
RNA id XM_034313230.1
length 3297
RNA type mRNA
GC content 0.44
exon number 8
gene id nuak1a
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12787882 ~ 12803422 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCTACTTTCACTCAAGGTTGCAATCAAATCCATCCGTAAGGAGAAGATCAAAGATGAACAGGACATGGTTCACATACGTAGAGAGATCGAGATCATGTCTTCTCTACGCCATCCACACATTATATCTATATATGAAGggtgttttcCCGGGATTCACCACGACCCTGGCCCAAGATAAAGCACTTCCTGAAGATGAAGTAATGAATTTTGTGAGGATTCAGAACAGATGAGAACTAGCAGTCTGGATTCATTGCAGTGGTTATGCTTCTTCGAGAATAAGGATAAGATTGTCATTGTGATGGAGTATGCCAGCAAAGGGGAGCTGTATGACTACATCAGCGAGCGGCGTAAGctcagcgagagagagacaagacACTTCTTCAGGCAGATTGTTTCAGCTGTACATCACTGTCACAAGAAAGGAGTGGTGCACCGGGATCTAAAACTGGAAAATGTGCTGCTAGATGACAATTACAATATAAAGATTGCAGATTTTGGGTTGTCCAACCTTTACCACAAAGACAAGCTTCTGCAGACCTTCTGTGGCAGTCCTCTTTACGCTTCACCTGAAATTGTAAATGGAAGGCCATATCGAGGCCCAGAGGTTGATAGCTGGGCTCTTGGTGTGTTGCTATACACTCTGGTGTATGGCACAATGCCTTTTGATGGGGGAGATCACAAAAGACTCATACGCCAAATCAGCAAAGGGGAGTACAGGGAACCTCCCCAGtcatcagATGCTCGTGGCCTGATTCGTTGGATGCTGATGGTAAACCCAGATCGCAGGGCCACTGTAGAGGACATTGCCAACCACTGGTGGGTGAACTGGGGCTGGAAGACCAGTGTGTGTGACTGCCAGACTCAGCGAGAGAACAGCTCACCCATGCTCGCTCGCTTTATCGACTGGCAGAGTCGCACTGAGACGCAGCCAAGCAAACTGGCTTGCCCCGATTCAGGCGCCAACACCAGTGGGACCATTTCAACTCGTCGACTCAGGAGGTCCTCAAAGGAAAATGAGGGTGGCATTAGGGCCGTTCTAGAGGAGAAGCCAGCCGTGAAGAGGCCCAAAAGTATCCTAAAAACACGGGCAAGCACCGGAGATCAGCGGTCCCAAAGCTTGTGTGAGGCTGAGTTGAGGCGCTCCATCTGCTACAGGGATGTTGAGCCCACCTCGGGTCCCGAGAGAGAGGAACCAGCAGGTGGCTCACCAGCCAAAATGATGCCTTCCCTTCCCATGAAAGGCATCCTGAAAAACAGCCATCAGCGCGAGTCTGGCTATTATTCCTCTCCAGAGCGCAGCGAGTCCTCCGAGGTGCTAGGGAGCACTGTGGCCCCGCCTCCCAATGGCTCACCACCTAAAAGGGTCCCTGGGAGGAAGGGCATATTGAAGAGGAATGGGAAATACTCGTCTCACGTGGCGCCCACGCTGGACTCTAAACTACCACAGAGTCAGATTCAACCCTCAGCCATCGTGAGGGAGGAGATAGGCATCCCGAGTGTGGCAGTGGATTGGCCACCCGCTTCTCCTAAACCTAACATCAGGGGCAGCCTCTCAGCCGAGGATCTACTGCAGATGGCAGGATTTAGGGGACTGAAAGCAGCAGTGCCCCTCCATGGCTCAAAGAACACCCGCAGCCCACCGGGATCTCCTGGGGACAATGGCAGCTTCTCCCTACTAGGAGATATGGATGATGTGACTCAAGTGTATCAGCAGGCCCTGAACATCAGCAACCGTCTCAATTAGAAAGGGAGTGAGAAGGTGATCGTTGATAGGCTATGGCAGAGCGACTGGATCAGTCAGGAATAATCAATCATGCATTCAATCACTGACCTTGAACTGCATTATGTTTACATGCTTCAAGAAGGGAAATCTGAAGCTGTGGAGTTTAACATGTCATCATGTTGATGGTTCTCTTTTATTCAACTCCGTGACCCGGGAAGAATGAGGCAAGCACCTTATTGGCACATTGTCCTCCGTAAAACATTACAAACCTGATTGCTTACTACTGACATACaacacaaactaaaaaaaaaagtacacagttaagaatattagaattatttatttataaatgttttgggCATATGAATCTGCATGGCCACAAAAAGTCATTATTGTTTATACATTGAACTGAAAGGTCCAAGTCTAGACTGTCAATGCTATGTTAGCTTGACTTAACAGTGACATAACAGAAGGCACATattggggtcagaggtcacatcAGCACTAGATGAGGATGTCACAGTgactctcacagacacactgctgtTTGCAGTCTGAGCCATTTAAACATGTGGCATAACACGGTGGTGGTACTGGGTGTAACCTGCGGAGTAAATCCAGTGCAGGAACACCCTGCACTTCAACAACAGCCACTATTGAAAAAAGAGGAATAGGCTAGACTATTCCTGTTAAATATCAGTGTGTCAAAATGCTGCTCATTCCAAACATGACAGGTCatgaaaacaaacttttacaaaatgtacaataaatgaCTTGTAAAAAGGTCAGGTTCAAGACTGTACAGTTAGACCTAACTAAACAATAGATGCTTTTGAGTATTGTGAAAGtgcagtgtttttctgtttatcagACAATGGAATACTACCTTTAACTGGATCTACAGTGCTAAATGTTATACTATgttagtatttttttgtttttcttacattGATACATTTTGCTTTCAGGTTTGATTATGCAaatggatgagtgtgtgtttggcttaATTTCAAGGCAGTGGAATTTTACTGACTAGCCACACTTTAAGACAAATGTGCTTTATATGTAACAGGCTGCAGAAAGGAGTGCATGATCTGGCTATACATAAACCAAGAAacggaaaaaaaacaatgatactATGCTTCTATAACTgccaaactggaaaaaaaaatgttagcaccTATTTATCACTTAGGGTCATTTTCATATTGCAGTAATTAACTGgatattgtgtatttatatgtatttaaatgtacTGTTATTTAATCTttcatgtattatattattgtacattattACCATGGCCAttgtttttagcaaaatgtatttgttaaCTTTGACCTTAGAAATGTCTTGTTGTGTGCCTCCATTGGCCAGAAGattgtcattaaaataattatccACATTTTGAATATGGTTCaatttacagtattaaaaataagTAGTTTGGTTAGGTATCTGTGACAAACACTCTGTCTCTGTGGAAATAAATGGTGTATTAAGGACAGTAAGGTCCATGCTTGGTCCACAACACTTTGGCTACTTCTAATAAAGGTCTATGGTGTAGAATGa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 310253 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 328790 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 418617 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 533727 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 693823 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 347626 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 370019 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 460496 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 521517 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 521517 13320173 ~ 13321414 (-) True G282006
XM_026922806.2 mRNA downstream 151466 12592087 ~ 12636416 (-) False abcc9
XM_026922804.2 mRNA downstream 151466 12592087 ~ 12636416 (-) True abcc9
XM_026922809.2 mRNA downstream 154662 12592087 ~ 12633220 (-) False abcc9
XM_026922808.2 mRNA downstream 154662 12592087 ~ 12633220 (-) False abcc9
XM_034313153.1 mRNA downstream 154662 12592087 ~ 12633220 (-) False abcc9
XM_034313323.1 mRNA upstream 10665 12809321 ~ 12819706 (-) True prl2
XM_026922677.2 mRNA upstream 164060 12962716 ~ 13110214 (-) True LOC113531778
XM_026922632.2 mRNA upstream 390206 13188862 ~ 13198925 (-) True tnni1d
XM_034313190.1 mRNA upstream 478270 13276926 ~ 13304279 (-) False scyl2
XM_026923049.2 mRNA upstream 478270 13276926 ~ 13302507 (-) True scyl2
XR_003403346.2 other downstream 206819 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1127555 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1199858 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1528490 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1780739 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 2375692 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4159868 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4304909 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5180129 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 5180129 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile