RNA id: XM_034313288.1


Basic Information

Item Value
RNA id XM_034313288.1
length 3276
RNA type mRNA
GC content 0.44
exon number 3
gene id dyrk2
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19859501 ~ 19868173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCCTGGAGTGTGATTGTAAGCGCTCTTTAAAACAGCCCTCGGCGCGGTTATGCCGCACACTGGACGCTGGATTAGACGTGTTTATTCACTCCGGAATAACGCGAAGCTTTGAGAAAAACCAGGCGCTTTCGCTTTTCTAACCGAAACCGATGTTTGCTACACAGTAGCTTGTAGCTGTAGCCGTGTTTTCCTGCTTTATCCTCAGTGCTGGGCTTCTCTTTACACATGCTGAAGGTAAAGGGGGTGAGCTGTGCACCGGGGCTGTCCGGTCTGGAGCAGGGAGCGAGCCGCCATCACCCATCACACTGCCACCTCTCAGGAACAGCAACTCGCTCACGGTTGGAGGCAATAAGAACACGATGAATGACCATCTGCATGTCGGAAACCACCAGCAGATCCACGTTCAACAGCTGTTTGAGGAAAACAGCAATAAGAGGACAGTGTTGACGACACAGCCAAATGGGTTGACGCCAGTAGGCCGAGCAGGCTTGCCCTTGCCGGAGAGGCAACAAGAAAGCAGCCAGTGTAGGGAGGGCAGTTCCGCCTCCACCAAATCCACTGAAAGCAAGCCCAAGATAGCTCCTATTACTCCTGAGCAGGCCATGAAGCAGTACATGTCCAAACTGACAGCATTTGAACACCAGGAGATTTTCAACTACCCTGAAATATACTTCATAGGACCAAATGCTAAGAAACGGCCAGGTGTGGTCGGGGGCTCAAATAATGGTGGTTATGATGATGATCAGGGCTCTTATATCCATGTACCTCATGACCACATAGCCTACAGGTACGAGGTATTGAAGGTCATTGGTAAGGGCAGTTTTGGACAAGTAGTGAAGGCCTATGACCACAAGGCCCACCAGCATGTGGCTTTGAAAATGGTGCGCAACGAGAAGCGGTTTCATCGCCAAGCAGCCGAGGAGATTCGGATCCTGGAGCACTTGCGCAAGCAGGACAAAGACTCTACTATGAATGTCATCCACATGCTGGAGCACTTCACATTCCGCAACCACATCTGCATGACATTCGAGTTACTCAGCATGAACCTGTATGAGCtcataaagaaaaacaagtttCAGGGCTTCAGCTTGCCGCTGGTGCGCAAGTTTGCGCACTCCATTCTGCAGTGTCTGGACTCCCTGCACAAAAACAGGATCATTCATTGTGACCTCAAACCCGAGAACATCCTCCTGAAGCAGCAGGGACGCAGTGGGATAAAAGTGATCGACTTCGGATCCAGCTGCTTTGAACACCAGCGGGTCTATACTTACATCCAGTCACGCTTTTATAGGGCACCGGAGGTCATTCTGGGCTCTCGGTATGGGATGCCAATCGATATGTGGAGCCTGGGTTGTATTTTAGCGGAATTACTAACGGGGTACCCTCTCTTGCCTGGGGAAGATGAAGGGGACCAACTAGCATGTGTCATAGAGCTACTGGGCATGCCCTCCCAGAAGCTGTTGGATTCGTCTAAGAGAGCCAAAAATTTTGTCAGCTCGAAGGGATATCCTCGTTACTGCACAGTCACAACCTTACCTGATGGCACTGTAGCACTAAACGGTGGACGGTCACGTAGGGGCAAGCTTCGAGGTCCACCAGGAAGCAAGGATTGGGTAACAGCGCTTAAGGGCTGTGACGACCCCCTTTTTCTGGACTTCCTCAAGCAATGTCTGGAGTGGGACCCGGCTTTGCGCATGACTCCAAGTCAGGCCCTCCGCCACCCGTGGCTGAGAAGACGCTTGCCAAAACCTCCCACTGGGGAGAAAACTACCGTAAAGCGAATCACTGAGGGCACAGGTGCTATAACCTCTATCTCCAAATTACCTCCCACATCAAGTTCAGCCTCAAAGTTAAGGACTAACCTGGCACAAATGACTGATGCCAATGGGAATATACAGCAGAGGACAGTGTTGCCAAAATTAGTCAGCTGaatactaattttttttgtttggttctttgttttgtttctatAAATGTTGGTATTTAAATGTGGAAAGGTGAGCATCCACAAGTGTGAAAGGTTTTAGGAATATAGTCTTTAATCCatcatttatttacagatttgtagcaccttttttttttttttttttttgaaacacttTTTTAGAAATACTAAAATGGCCAAGAAAGAGGGAACAGTGCTTTTAAGTTTTTATCTCAGGACTGTGTAGAATGCCGCAGAGAGCATTCATGCAATCTGGCCTATTACTAATGAAGTCCTAATCACTAATATCTTGTAGCGTAGAGTAAAGAGTTGCGACAATGAAGAAAATTTGGATTTTGATGTGTGTACTCGCTAGCGTTTAGCTCGCTACCTCTATGATCTGTTAGAACAGCACTGCGTTGATGAAGGAGAGTTTTACTTGCATTTCTAAAAAAGCTGTGCTATCTGCAGTTGTGTAGCGTTTCAAGCTCTTTGTATTTGATATTGTGAATGAGAAGGTAGGAACGAGATACAGGAGACATTTCAAGAACATAGTGAAAGCAAAATGAAGGTTTTAGACTGCTTTGAGGTAGAAGGGAGAAAAACAATGTTTACATGACAGACTTGGTATGTGCCTAAAATCTCTTGACATTCCTTATAAAATTGACTCAAGGAAAAGAGAGACTTCAGGGTAGTGTAACTTTATAAATAGACTTCTGGCAAGTTAAAAGGAATTTATTTAGTTTGAGTGGAAACTGTTCTCGGCAGTACTCGACAGGCTCGTGTATTTAACTATAAGCTATTCTCTGGAAGAACTGCTGGGAACAAAATGTTGTACTGTCTACGAGGGGAAACTTTGGTGCTTTACCTTTTTTATATGAAaggtatttttgttttaaaaaataattttaagccTATGCTTATGGaacaaaataatgttttgaAACTAATCGTAGTTAGTAGGAATAGGAAGCAATAGGAAGCTTTTTAAATCGCTAATTCTCCCTTCTAAGGACTGCTGCTTTTGCAGCGATTTAGAAAGGATCGTGCTAATCATTTATCGACCGGACTACTTGAATCTGAGCCAGTATTAACACTATCATTGAAAAACCATGGCAGAGAAGGGGCACTTTAGACAAGAGTCTCCTCTCATCCGGCTGTCGTTTGTAATCAGAGATCACCCTCTGAAATTCATAtcacattttctatatttagtTTTTAAGTGTGGACTCGCTAGTATGTGGCCAGAGTTTAAACTCTTAAAAGCTTGTTCCCTTCTTTAAATGAAATTGCATGTTtttacccaaacacacacacacacacacaaaaaaaaaaaaattagtggaAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338032 lncRNA downstream 140366 19710897 ~ 19719135 (-) True G285362
TU338029 lncRNA downstream 180226 19678500 ~ 19679275 (-) False rap1b
TU338031 lncRNA downstream 181906 19676840 ~ 19677595 (-) True G285361
XR_003403329.2 lncRNA downstream 271257 19580854 ~ 19588244 (-) True LOC113532316
TU338109 lncRNA upstream 48860 19916609 ~ 19920334 (-) True G285437
TU338095 lncRNA upstream 85864 19953613 ~ 19960579 (-) True G285425
TU338098 lncRNA upstream 95210 19962959 ~ 19967411 (-) True G285428
TU338096 lncRNA upstream 156994 20024743 ~ 20026895 (-) True G285426
TU338286 lncRNA upstream 410777 20278526 ~ 20291863 (-) True G285593
XM_026923047.2 mRNA downstream 124269 19678283 ~ 19735232 (-) False rap1b
XM_026923046.2 mRNA downstream 124269 19678283 ~ 19735232 (-) True rap1b
XM_026922602.2 mRNA downstream 183118 19671525 ~ 19676383 (-) True mcat
XM_034313224.1 mRNA downstream 194552 19633422 ~ 19664949 (-) True cfap54
XM_026923713.2 mRNA downstream 340495 19516354 ~ 19519006 (-) True cbll1
XM_026922683.2 mRNA upstream 24163 19891912 ~ 19896958 (-) False si:dkey-39a18.1
XM_026922682.2 mRNA upstream 24163 19891912 ~ 19896110 (-) True si:dkey-39a18.1
XM_026922802.2 mRNA upstream 30511 19898260 ~ 19922472 (-) True cand1
XM_026923434.2 mRNA upstream 375159 20242908 ~ 20256547 (-) True wif1
XM_026923807.2 mRNA upstream 591880 20459629 ~ 20500907 (-) True lmo3
trnae-cuc_38 other downstream 1647108 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1671503 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1766957 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1768879 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1775647 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 445318 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 554652 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1593077 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1593077 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1593078 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile