RNA id: XM_034313292.1


Basic Information

Item Value
RNA id XM_034313292.1
length 2711
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC113531974
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17498388 ~ 17506497 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACGGGTAGGAAATACGTTACGCTCACGATTCGCGCATGCGCATTTGGTGTCTACAAGTACTGCAAGCACCGACCACTTTTAGCAGAAAGTCCAGCTAAATTATTGAAGCACGTTATggGTTCTGTCCCACCCATTTCCTCACTGCGCTTACTGGTTCCACCTTTACGGCTGATGTCTGCCTTTATGTGGAAAATTGCCCAACAGCAACATCTGGAGCATTACGGCAAACTAGAAGAATTTGTCTCCTTAGTTACAAGGCTCGTCCCAGAGGTCCTGACCAGCAGACAGAAGGCCACACTGGTAATGGGGCTCAGAGCAAAGATGATTCTCGAGATGTGCCGAGGTGAACTGCCGGCAGACCTCGAGACAGTGAAGTCGCACATACAGAGGATTCAGTCCTCTCATTCATCAAAAGGAATTGATACAGAGGCAGACATTTTACAGGCAAACCTTCTAACGCTTGTGCTGGGTCTGCTGGAGGATCCTGCCAAAAAGGAATATTTCTTCCAGGAGGTTTTCCCACATGAGTATGGTCCAGAATTTGACCAAGCACTGCAAGTCCTGGTTGGCCATTTTCTCTCGAGACTGGAACAGCTGCTGCCAGTTCCCAGCTTCAAACAGactTCATCGTGGCTCAGTGCCTGCCCCTGGGAGTGGAATGAGTACCTGGAATCAGTTTGTAGGACGGAGAGTTTATTACCTTTGATGCAGATTGGCATTTGTGGGACTTTGGAGGATAACGCACTTCCATCGATTGTGGAGGACAGAATCCTCTCCTCGTTGTCTCTAACCGACATGGTGATAACCACCCAAACGCAACCCCCGTCCCAGGGGCCTCAGGATGTGGACGGCGAGAGTGCACCAGAAGATGGTGTCCAGGATGAAGACGTCAGTTCAGGTCTCGATGGATCTGTAGCTGCAGAATACGTAAGAGCCAACGACGGTGCAATGGAAGAAGATTCAGAGAGACAGACctttgagagagagatcaaGGAAGCTATTAAACATTTAGAAAAGGAGAGCGACATGTCGGCCGAGGTGGCTGGGAGTCTGCAGAGCACAGGAGTGCCAGAGGTTGACTCAGAATTGAAAACTACTGATGAAACAGGAAGTGCCATATCTGAAGCAGCACCTGCAGCAGAAGATATTACAGCTGAACAGCAAACCGTGATCCCCAGAGTTGCACATACAAAGATCATGCACCCACTGGAGGTTTCACACTCTACAGCAAACCGAGGGAGTGACGAGGGGGTAACCGACCAACATGATCCACAGCAgACTGTTTTGGAGGAAGCAGCTCAGGGAGAGGTAACTGCTGAAGCACCAGAGTCGGAGAAGTCTCCCAACAATCCACTGGCAGTCGAATCCTCAAAGATACCTTTAAAGAGTTCTTACCTCCTTGGCAGGCTTTTACACAAGTGTCTGAAGTGTGGCAAGCGTTTTGCATATCGCTCGGAGCTCCATAAACACCAGGAGAGTCACAAACTCGCAACATCTATCAAGTGTTGTGAATGTGGGCAAATTTTCAGAGATTCTAAACTCCTGTCTCTGCACCGGCAGAGAGGCTGTCGTATGAGGACGTACAAATGCATCAAGTGCGGAGCAGCCTTCAGGTCTCTCTCGAACTGGTACAAACACCAGCAGGCCCACAAGGTGGTCTGCACACACAAATGCCCGGAGTGTGGGAAGGTGTTCCGAAGTCTCACAGGCTTAGTGGCTCACAGACGAGAGCACATGGGTCCTGCAGTAAACGGCGTTTACACCTGTGACAAATGCGACATGACCTTTGGCTCGTATCGAGGCAGGGTGCTGCACCAGAGGGTCCATACGGATAAATCCAAGCAGCCTTCTCGAAAGGAGCGTGAACCCGGGAAGTGCCGCTTCTGCGACGAGTCGTTCGTCCTGCTCAGCGATTTGAGAGTGCACCTGAAAACTCACCCCGAGTACAGACCGCATCAGTGCGACCAGTGTGGGAAGTGCTTCGCTCTGCACCACAGTCTCCTCGCACATCTCTCGAACCACACCGGAGACAAGCCATACCTCTGCACGCAGTGCGGCAAGCGCTTCTTCAGCAAGGTCCAGCTCAAATCGCACATGAGGTGTCACTCGGGCGAGCGGCCGCACATGTGCCCTCACTGCGGGAAATGCTTCTCGCTGCTCGGCAACCTGAACATCCACGTACGAATCCATACTGGCGAGAAGCCCTACTTGTGCCGTCATTGCGGAAAAGGCTTCATCTCTGCCGGAGAGCTGCAGGTGCACGAGCGCAGTCACACTGGCGAGAAGCCCTACTGCTGCAGCATTTGTGATAAAAGATTTGTGGTGTCGAGCCACCTGACGGCTCACAAGCGCGTTCACACAGGAGAGCGTCCCTACACCTGCACTCAGTGTGGCAAGACCTTCATACGGAGATACGACTGGAATAAACACATGTACACTCACTCAGGGGTGAAGCCCTTCCCCTGTACTATCTGCCAAAAGAGCTACACACGTCGCACACACTTGAACAGACACATGCAGAGCCACGGCGCGGGCCATTAGGAACATCAATCTGAATGTGACCAGAGTGGAAATTGGTTAATGTACAGAAGTACATACTTTAAATAAGGACATTCCAGTGCAGAGTTTCAAAAGCACATTGCTTATATGTTTTGTTTGACCAAATGCAGATATAATTAACCAATAAATGTTGGCCTTCTAGTTTATcaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336452 lncRNA downstream 455108 17041627 ~ 17043280 (-) True G284003
TU336181 lncRNA downstream 648626 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 878670 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 1048622 16448439 ~ 16449766 (-) True G283546
TU336615 lncRNA upstream 1422 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 8156 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 15972 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 42878 17548332 ~ 17553258 (-) True G284146
TU336631 lncRNA upstream 52953 17558407 ~ 17564955 (-) True G284145
XM_034312988.1 mRNA downstream 3601 17486811 ~ 17494787 (-) True LOC117599443
XM_034313145.1 mRNA downstream 12967 17484558 ~ 17485421 (-) True LOC117599538
XM_026923395.2 mRNA downstream 17554 17462955 ~ 17480834 (-) True slc37a3
XM_026923436.2 mRNA downstream 59310 17434442 ~ 17439078 (-) True sapcd1
XM_026922628.2 mRNA downstream 181806 17261690 ~ 17316582 (-) True LOC113531742
XM_026922642.2 mRNA upstream 85666 17591120 ~ 17594317 (-) True ckap4
XM_026922984.2 mRNA upstream 106436 17611890 ~ 17616249 (-) True LOC113531978
XM_026923555.2 mRNA upstream 290430 17795884 ~ 17809289 (-) True gnsa
XM_034313218.1 mRNA upstream 402174 17907628 ~ 17971244 (-) False ano2b
XM_034313216.1 mRNA upstream 402174 17907628 ~ 17971244 (-) True ano2b
trnar-ccg_5 other downstream 394751 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 533501 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2320775 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4917325 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5838061 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 473331 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 473331 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 565293 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 577784 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 578329 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile