RNA id: XM_034313294.1


Basic Information

Item Value
RNA id XM_034313294.1
length 2769
RNA type mRNA
GC content 0.47
exon number 15
gene id slco1c1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21796905 ~ 21842435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgaAAAACTGACCCTTGTTTTTATCCATGTTCAGATTTTACAACTGACCCCTGTACAACTGACCCCAGTCTCCCCTGGTAAAGGTTTACATTACTACCAGATCCCTGACACATTTTGCTACCAGCTGTTCGGAGTAAACTGCATCTGAAATGAAGTTCTTCAAATAATGTTTCTTTTGCTGCCCTGGAAAACATCTCGAGAGGACCTAAGCAGCTCCAGCACCAGTCTGCGGGCTAAGAGGTGTCACGTGTTCGAGCCAATTCATCGAGAATCTCGTGAAAACGGTGgaaactgtttctcaggaaggTTAGGGGGCTGACGCAAAAGATTATTCTATTCAGAACAGCCCTGCTTTCTGCAGAGAAAACACGGGATGTGACTCGGACCCGAAGCACAAGGCTTTCATCCAGCCCTGTGGGAAGTTTCCTTGAAGCCCAGGCAGCTGCTGCGCAGGAGAGCAGCTGATTGTGTAGCGCGAGGAAAAGTCCAGCTCTTATACAACACCCGGACAGCACGCGCACGAGCGGCTCTTAAACACTTCCTGCTGGAAGATCTTGGGTGTCTGCATCAATGGCAAGAAACTTCATTAGGGAAAATGGAACTTTTTTGAGGAGGATGGACCCACCGAGAAAAGCCACTTGGTCACCAGAAAATGGGATTACATTGAGAAGGCAGCGCTCATGCTGTTCCAGCCTAAAAATGTTCCTTGTAGCTTTGTCCTTTGCATACTTTTCAAAGGCTTTATCTGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAGCGGCGCTTCGACATCCCCAGTTACTTAATAGGTATCATTGATGGCAGCTTTGAAATAGGTAACTTGCTGGTTATTGCCTTTGTCAGTTACTTTGGTGCCAAGCTTCATCGACCAAAAATCATTGCCACTGGATGTCTTCTGATGTCACTGGGGACATTCCTAATTGCACTCCCTCATTTTATTATTGGACGATATAAGTTTGAAACATCAGTTAGATCTTCAGTGAACTCAACACACAACGTCACACCATGTCCAGCCAGTCCACCTAGAATGCTGTCTGTGGGTAACCATCCCTCCACAGTGTTAAACACAGgtTGTGAGAATGAGTCCAGATTGTCCATGTGGATCTATGTATTACTGGGGAACATCTTGCGTGGAATTGGTGAAACTCCAGTACAGCCTTTGGGAATTTCATACATAGATGATCATGCTCTGGAGGACAATGCTGCCTTCTACATTGGGTTTGTTCAGACAATATCGGTCATTGGCCCAGTGTTTGGCTACCTGCTTGGATCTCTTTGTGCAAAGTTATATGTGGACATTGGATTTGTCAACATGGAGGGTATTACAATCACACCAGGAGATGCACGCTGGGTGGGGGCGTGGTGGCTGGGCTACCTCATAGCAGGGCTCATCACACTGTTGTCAGCTGTGCCTTTGTGGTTCATGCCCAAGTCTCTCCCTGTATTAGAGAGTCAATTGTCCAAGTGCTCCCCCGAGCAGACCAACTTTATCAAAGACTCACACGTTGTGCACCACAAATGCCAGGCAGATGAGGCCACCAGTTTTGTTATATTGGCCAAAGattttttgCCAACACTGAGATCTCTCCTGGGGAACCCAGTCTACATTTTGTACCTCTGTATAACGATCATCCAGTTTAATTCTTTGATAGGCATGGTCACATATAAACCAAAATACATAGAGCAACATTACGGGCAGTCAGCATCCAAAGCCAACTTTTTGATGGGAATGATCAACATCCCAGCTGTTGCCTTAGGAATGTTCTCAGGGGGAGTGCTTATGAAGAAGTTCAAGTTGGGCATCATGGGAGCTGCCAAGTTTGCAATGGGAACATCTCTTTTGGGCTACTTCCTCTCGCTGTTCTTCTTTGCCTTGGGTTGTGAGAATGCCAAAGTGGCTGGTATCACTGTGTCATATGATGGGGTAGAGAATATCTCCACTGACGAGAGCTCGCTATTTGTGAGCTGTAATGCAGACTGTCTGTGCTCAGAGACTGAATGGGACCCGGTGTGTGGCGAGAATGGTCTCACGTATGTCTCTGCGTGCCTGGCTGGGTGCCGGATGTCTCGTGGCTCTGGAGTGGACATGACGTTTGAGCAGTGCAGCTGTGTGGCAGGGGGAAACCTTACTGCCTATGTGGGGCAGTGTAGACATAGGGAGAGCTGCCAGCGAGTATTCCCCTATTTCCTGGCTTTGTCTGTCATCACTTCCTTTATCATCTCCCTGGGTGGAACACCAGGATACATGCTACTAATCAGATGTATCAAGCCAGAGCTGAAGTCCCTCGCTTTAGGATTTCACACCCTGACAACACGCACTCTAGCTGGCATCCCAGCTCCAATATACTATGGAGCAATCATTGACACCACATGTCTGAAATGGGGCCATAAGAAGTGTGGAGGAAAAGGAGCATGTAGAATCTACAACACTACTGCCTACAGGATAGCATATCTGGGCCTAACGCTGGGCCTCAGGACAGCCTCCTTCTTCCTCTGTGCGCTGGGTTTGCTGATCTTACAGTGGCATGTCAAGAGGCAGAAGACCAGAACACTGTCTAATGGAAGCACTGTCACAGAACTGCAAGctctgagaaaagaggaaatcaGCAACTCGGATCAGTCCCCACGGACCTCAGATTATGACCCTGAGAGGGAGACACGCTTGTGACAATACTTTTATTtgtagagcaaaaaaaaaaaaatctactgaaCAATGTGAAGTACAGAACATTGCTATGCTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339429 lncRNA downstream 9533 21786152 ~ 21787372 (-) True G286613
XR_003404520.2 lncRNA downstream 144474 21651622 ~ 21652431 (-) True LOC113544611
XR_003404510.2 lncRNA downstream 198505 21584065 ~ 21598400 (-) True LOC113544500
TU339340 lncRNA downstream 222805 21573825 ~ 21574100 (-) True G286546
TU339096 lncRNA downstream 300286 21496377 ~ 21496619 (-) True G286337
TU339527 lncRNA upstream 229776 22072211 ~ 22075279 (-) True G286694
TU339531 lncRNA upstream 255173 22097608 ~ 22097821 (-) True G286698
TU339533 lncRNA upstream 274162 22116597 ~ 22116953 (-) True G286700
XR_004579983.1 lncRNA upstream 305838 22148273 ~ 22149018 (-) True LOC113544512
TU339588 lncRNA upstream 346884 22189319 ~ 22235065 (-) True G286740
XM_034313049.1 mRNA downstream 14820 21761681 ~ 21782085 (-) True cog5
XM_026943483.2 mRNA downstream 45323 21731589 ~ 21751582 (-) True ints13
XM_034313134.1 mRNA downstream 166402 21603900 ~ 21630503 (-) False nrf1
XM_026943465.2 mRNA downstream 166402 21603900 ~ 21630503 (-) True nrf1
XM_026943470.2 mRNA downstream 331372 21460827 ~ 21465533 (-) False LOC113544587
XM_026943468.2 mRNA upstream 18045 21860480 ~ 21931987 (-) False pde3a
XM_026943467.2 mRNA upstream 18045 21860480 ~ 21931987 (-) False pde3a
XM_026943466.2 mRNA upstream 18045 21860480 ~ 21931987 (-) True pde3a
XM_026943445.2 mRNA upstream 122697 21965132 ~ 21980322 (-) True aebp2
XM_026943437.2 mRNA upstream 140581 21983016 ~ 22089416 (-) True plekha5
XR_004579970.1 other downstream 325805 21460826 ~ 21471100 (-) False LOC113544587
XR_003404518.2 other downstream 325805 21460827 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other downstream 325849 21460826 ~ 21471056 (-) True LOC113544587
XR_004579972.1 other downstream 325850 21460827 ~ 21471055 (-) False LOC113544587
trnaa-ugc_16 other downstream 1374433 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU339722 other upstream 643801 22486236 ~ 22489467 (-) True G286852

Expression Profile