RNA id: XM_034313335.1


Basic Information

Item Value
RNA id XM_034313335.1
length 2699
RNA type mRNA
GC content 0.43
exon number 7
gene id pawr
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3205288 ~ 3246996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGACTTTTCGGTAGCCTTGTTCGTGGGAGAGGCGCCGAGCTCTGTGTCTAACCGAGAACGACTTCATTCCGCCGGATCGCTTCACCTGGAGAGCGCGAGGAGTgtggagcacacacactctcacacactcacacactcacacacacactgcagGTTTTCCCTGGTGAAGGAGGAAATGTGGTGCATTTGAGTcccttatttattatttatttcatttgacatttttacaaACTCATCCTCATCCGGAACGCAGGTTTagaaacatttgaaaaaaaaaaaacatggcatccGGCGGATTCAAGTCCAACGCAGCCACGGATTTTCTGGAAGAATGGAAGGCCAAGCGGGAGAAAATGCGTGCAAAGATGTTGGGGGATATCGCAGCGATCACGAGCGCCAACGCGGTTACGACGAGCAGCAGCAGCGTCAGGGCACCGGAAACCCGATCGGTACCAGACCTCAACAGCTCCAATGGAAATCCGGAGCGGAGCAGCTCCGTGCCTCATACGGTGGCTCGATCGGCTTCGTCTTCCGCCCTGATCAGGAGAGCGGACGAGGAACCGCACGTGTACATGGTCCCAGCTCAGGCGTCGACGCCGGTAGCGCGAGGACCCGATGCCAAGAAATCCACAGAGAAATTGCCGGAGCCTGGAAGTGCTTCCCCGTGCCAGGACAGTGACCTCGAGAGTCCCAAagggaaggagaagaagagtTCCGGTCCCAGTGCTCGCAAAGGGAAAGGTCAGATTGAGAAGAGGAAGCTGCGTGAGAAGCGCCGGTCCACAGGAGTGGTCAGCATCCCGTCCAATGAGagtttggaCGAactggatgatgatgatggagataAGGGGAGGAAGAATGAGGAAGAGCTCACACAGCACAACACTCTGCAAAACGAGtccatgacctctgaccttggAGCCGGACATGCacagGACACAACGAGGTCAAGCAGTGGCCGCCACaaaagtgaggATGATGTAGGAGGAAACAGACTTCGTCAGACTCATGCTCGTCACGGCAACTCAGGACTGGAGAGGAGGATTGAGGAGCTAGAGAAGgagctGGCTCTGGAGAGGCAGGAGAACGCTCAGCTGTTGAAGTCTCATCAGGATAAAGATGAGCTGATTGTTAAACTAAAGGAGGAAATCGATCTGTTAAACCGGGACCTGGATGACATTGAGGATGAGAATGAGCAGCTGAAGCAGGAGAATAAAACTCTGCTGAAGGTCGTCGGTCAGCTGACCAGGTAGAAGCGTGAAGACCGAAACaccatgagagaaaaaaaacaggaaagtcCTACGGAAAGTTCTAGAAATGTcgtatttaatgtaaatgtctgtgtacATACGGAAAATTTCAGAGGATGAATGTACGTTGCTATGGCATCACCTGTCCGTcggcattttctatttttttttttttttttgaagtgtttaTTTTGGCTACGTCCCAAACGCTAGCTCATGATAGTTATCATTCTTGCTAAAACATTATCCATTACCAATAGTGCACATTATCAAACACTAGTACTTTGGAATGCTTAACTCATATGCTAGCTGCTAATTAGCCTTTATCTACCTAACGAATAGTCTTCACTagcacaaagtttttttttttaaccaaacacTAGCGTTTTGTCATGGTTTTTGTCAAATCATATGCTAGCTGCTAACCTGTTACCTAGATAAAAAATAGGCTAAACCACCACAAAGTATGcagattaaacatttttctattaAATACTAGTATTTCTAAGTCATATGTTAGCTGCTAATTGTCCTAAAACATGGTTAGCGAATAGGCTACACTACAACAAACTTAgcagtttttattaaatattaacattttcaaGGCTTTTAGCTGAGTGTTGatttatgtagtgcactctTTCATGTGCTAGCTGACAATTAGTATTTGTCTAGCTAATgaattcatatttgtttttgctaGCAGTTTTCTGTCAAACACTAGTATTTTGGAGTGCTATCTCGTATGCTAGCTGCTAAGTAGCCTATAACCTAGCTAACACAAAGGCTATTTTAGTAcaaagtatgatttttttttgctagcagTCTACTATCAAACACTAGCATGTTGTATAGATGAATAGACTACGCTAGCACAAAGTAGCCGTCCTCTATCACTTCTAACACTAGCATTTTGGAGGGTTGATTTATGTTTAACACTAATGCCAATATGCCAGGTGTTAGCCTATTAGCTGTTAATTGGTGTACAAGTTTATTTTTCTACAGATTTCTTGATCAAACACTAGCATTGTGGAGTGTTTAGCTGAGTGTGTGGTGATTAGCACTAATCACTATTTAGCTAATCAGTTAAAATCTAGCAAATTGGCTAATTAGCAGCTAGCATATGAGTTGAAGTTATCACTATGTTGTTATTTTCTATGTTTTTCCTGTCAAACGCTAGCATTTTGGATTCATTAGCTGTAGAGTGCTATATATGCTGTCCGTATGCTAGCTGCTgattagccagttagctagctagctgatgttGTACTGAATGTAATAACAATCCCTCTTATTCTAACAGAAAATAGCATTTTGGAACTTTAGCCGAGTGTTTAGATATATCCTTAGCGCTAGACTTCTATCAGCTAGCTGTTAATTAGATGACAAAGTTGTGATGTGTTCCTTTGCTCATTAGCCAGTTAGCTATTAAATACACTACAGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326970 lncRNA downstream 223426 2979837 ~ 2981862 (-) True G275891
TU326881 lncRNA downstream 359384 2834700 ~ 2845904 (-) True G275815
TU326553 lncRNA downstream 495909 2632426 ~ 2709379 (-) True G275536
TU326541 lncRNA downstream 636024 2535444 ~ 2569264 (-) True G275524
TU326540 lncRNA downstream 655636 2514744 ~ 2549652 (-) True G275523
TU327065 lncRNA upstream 10705 3257701 ~ 3282365 (-) False ppp1r12a
TU327066 lncRNA upstream 10705 3257701 ~ 3282365 (-) False ppp1r12a
TU327067 lncRNA upstream 10705 3257701 ~ 3282365 (-) False ppp1r12a
TU327127 lncRNA upstream 52261 3299257 ~ 3372332 (-) False rps16
XR_003402473.2 lncRNA upstream 108458 3355454 ~ 3356433 (-) True LOC113523901
XM_034312982.1 mRNA downstream 527256 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 535952 2668355 ~ 2669336 (-) True LOC117599440
XM_034312980.1 mRNA downstream 537773 2664397 ~ 2667515 (-) True LOC117599439
XM_034312978.1 mRNA downstream 574960 2628665 ~ 2630328 (-) True LOC117599438
XM_034313123.1 mRNA downstream 656594 2482383 ~ 2548694 (-) True LOC117599471
XM_034312985.1 mRNA upstream 12022 3259018 ~ 3335017 (-) True ppp1r12a
XM_034312986.1 mRNA upstream 122684 3369680 ~ 3384923 (-) True rps16
XM_034313336.1 mRNA upstream 183194 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA upstream 183194 3430190 ~ 3494013 (-) False lin7a
XM_034313387.1 mRNA upstream 298080 3545076 ~ 3691686 (-) True ppfia2
TU327069 other downstream 3991 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 661657 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 698194 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 750207 2454252 ~ 2455081 (-) True LOC117599505
XR_004579944.1 other downstream 776347 2428508 ~ 2428941 (-) True LOC117599531
TU327062 other upstream 38841 3285837 ~ 3293790 (-) False ppp1r12a
XR_004579995.1 other upstream 183194 3430190 ~ 3494016 (-) True lin7a
TU327175 other upstream 290001 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 318039 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 489134 3736130 ~ 3737077 (-) True G276340

Expression Profile