RNA id: XR_004579995.1


Basic Information

Item Value
RNA id XR_004579995.1
length 4573
RNA type misc_RNA
GC content 0.40
exon number 6
gene id lin7a
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3430190 ~ 3494016 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttagtctctctctccagcagAAGCTCCAGtagttagtctctctctctctccagcagaAGCTCCAGTAGTTAGTCTTTCTCTCCAGCAGGAGCTCCAGTCGGCGCTTTTCCCGGTATCAGTAGCCCCCTCCAGCTTTTCCTCCTCACTCCCAGCTCCAGCTCCGTCATGGCGACAGTAGTGCAGCCTCTCAGCCTGGAACGAGatgtgGCGAGGGCGATCGAGCTGTTGGAGAAGCTGCAGGAATCAGGAGATGTTCCTGGCCACAAGCTGCAGTCACTGAAGAAGGTTCTGCAGAGTGAGTTCTGTACAGCCATCCGAGAGGTCTATCAGTACATGCATGAGACAATAACAGTGAACGGCTGTCCGGAGTATCAGGCTCGAGCCACAGCAAAGGCGACGGTGGCAGCTTTCGCCGCGAGTGAAGGCCACTCCCACCCGCGAGTGGTGGAATTACCGAAAACTGATGAAGGGCTGGGCTTCAACGTGATGGGCGGGAAAGAGCAAAACTCCCCAATCTACATCTCCCGCATCATCCCAGGGGGCGTGGCCGAGAGACACGGGGGCTTAAAACGGGGCGATCAGCTACTGTCTGTCAACGGAGTGAGTGTGGAAGGCGAGCACCATGAGAAGGCAGTGGAGCTGCTGAAGGCGGCTGAGGGCAGCGTGAAGCTGGTGGTGCGCTACACACCCAAAGTGCTGGAGGAGATGGAGGCTCGCTTTGAGAAGCTCCGCTCGGCCCGACGCcgccaacagcagcagctcctcattcaacaacagcaacaacaacacaacCTCAACACTCAACAGAACCACACGGCGTAGGTGAGGCTTTTCATTGCTTTAAGGCCCCCAACACACGGACAGCAGGGGGCGCTACAGTTACTGCGTTGttccagaagaagaaaaagtaaacGATGCACCATGAGCTTTATTGGAACTTCACAATCTGCAGACGAGGGTCGCGTCCTTTTCCAGCGAAGACCACTCTCCCTCGTTTTAGTGTACTACCTACAGCTTTACAACATCCTGAACGTAGACGCCGGTGCTCGCTAAACGTACGTGCGACTGCAGAACGACGACCTTGAGCACTTTCACTTCTCCTTTTTTCCACCAGTCGTGACCCGTTCCAAAGAAAACGTCCCGCTTGTAGTTTGATTAGCgcttttatttgtgtttttaaaccaGTTTCCTGTTTAGTCGCCGCCTTCTACGCTAACTTATTAACAGATTCTTCTGGTGCTTGTGTCTGTGAGAAAGAAAATCGTGTCCGATGTCGTCTTTTCCCGGATAAAAGTGAGGTATTTTATACCGTATTGTAgcaagaaatattttatatgaaaaagTGTAGATTTagcaataacacacttcagTTGGTTTTAAAAACGTCGtgaaaattctgtaaaaaaaaaaaaattcagtttaacGCCAAACACACGGTTGTGAGAAAGAAACTGGCCTGGCTAACAACAAACTGAAGCTAGCAGAGCATGAAAGCTAACTGCTAATGTCCCTGCGGGCTTAAGCTACTTttagctgttagcattgttagTGTTTATGGACATTCTGTGCAAATAAACTTAACTGTTAACTTTACAGTATGGAGCAAAAATGCTAATATAGCTAATGAAAAAAAGCTAGCAGAACTTTACAGCAGAGAATTACTGCTAGCCAACTGTACGCTTTTACACTTTAGCGCTAGTTAACATTTGCCTTTAGCCATGttagcatttttaaacatttcgtacaaataaaattaaaggtaCTTGACACAGTTGGGACAAAACTGCTACTTTtgctaacaaaaaaacagaagctaGAAGAACATGAAAGCTAACTGCAAGGATGAATATTAGCTTTAGCCCAGATTTGTTGTTAGCCATGTTAGCATTTGTGGACATTTCATACATTAACAGTTCATCGTCGTAATCACAGCATGGAGCAAATATGCTAAAATACGTAACAAAAAGCAAGCTAGCAGAACATTTAGCATTATCCCTAGCATTTCTGTTAGCTAACTACATCCTTTCAGACTCTAGTGCTAGTTAACATTTGACGTTAGCCATGTTAGCGGTCGTGGACATTCTGTACAAACTTAAAGGTAAATGACACATGAAGCCAAATGCTTCTATGCTAACAACAAATGTTAGCCTGCAGAACAGGAAAGTTAGCAGTTTAGCGTGGCTGCTAGCTGGATTGCTAGCTTTGtgctttgttaaatagcatTTTGGCTCCATGTGAAACATAAAATGAACCTGATTTACACAGAATACAGATTAAATATCAAAGCTAATCGATGCTAATCGAAGCTAATCGATGCTAATTTGCTTAAATTGAAGGAGTGTGATTAGCTACATTTACTGATTTGTTCACGATGCAATTTTACAGTTATTGTATGAAAACGATGATATTTATGAGGATGTGAATGTCGTACACAgatgtatgaaataaataaataaagttatataaagTCGTGGTCATGTAACATAAcgctattttattatttataaattttctAGTTTGTGATCTTGAAGAgtttttaattgtaattctattcaattttattgtaaattCCGAAACGAAGCGTCTCATTTGATCAAAACCGGCTGTAATTTTCTCCACTTCTGACAATCGTTCATTCACACGCAATTTACGAATGAATTGAATCTTTAAATAACTCTTTAAACGACTCTTTAAACGACtctttaaaggaacagttcagtGAAAAATCAAACgtacacaatattttttaatcGATTAGCCGAGACAAGCCGAGCTTGTTTGGTTTTGTATTAGAGCTACGATGCTATCGTAGCTAACATTAGCCTCATATGTACGCTCGGGTTATTTTAACATCTCAGTTGATGGGTTTGGGTCATGTGACCCAAAATGACGTAGCGAGAAAAAATCAGACGCAACTGCAAGAATTTTCGTTCAAATTTAACTTCATTTGTAATTTAGTTTTCGAAATTATATTTCCATAGAAATTCTGTAGGcaaaagcttttttgatagcCAGTGTTAGCCTGCTGACAAAATTTacgctagctaacattattagAGTGGAAAATATGGCTGACGTTAGCGTCTcttaataaataagacaaattaGTTTTTTTGGTAAGAAAATTTTTCATACAGTTTCAATTCttacataattatatttgtAGCTAATTATATTTGTTACTTAATTTCGAGCTGCTACATAACAATTAGGCTAATGTTACTTCTAGCTAGTTAATTATCTCCGATTAACCGCGAGCGCTGGAGTCGAGTTGATGCTAATCCTGCGGTTGATATTCGTCACTCAAGGCTTCAAAATGTGCAGAGATAGTAACTTAGGCTACGTCCACATTAAtccacattttcatttaaagtgcTTTCCGTTCCATCTACACCAGCATTTTCAAACGTTTCCCAAAAATTGCTCGTTCACACTGAAACGTCTGAAAATGCTCGCTTTGCTATACTGCGTGTGAGTAAAAACGTACGAAGCGTTGGCCTGCGTCGTTTCCGTCTGAAGGTTGTACAAAGTGACGTTAATCTTTAACAACACTATCAAACTGGACAGCAGCCACAACAACTGCAGTACGACATCGTCCaccatcttgtttgttttgagttgaatgagtcacatgactaaaaatacactATTGTTTTTGAATATGTCCATTTTCTCGGTCCAGACTACGATGCGAAAACGgcgttttcaaatttatccactTGGGAGAGAGTTTTCAAAAAGCTCCGTTTCAAATTTATCCAGATTAATGAGGACGTAGCCTTAAAAGTTACAAATGTTAACGTTAAGCACTCACGTTATAAAATGTCATTGAGCTTAGTGATGTCACTTGGAGCAAGTATATGAAaattagcgtgtgtgtgtgtgtgtgtgtgtgtgctagatTTTTGGGTGACTTCCGTTCCTTATTTTAGCCTCATAACTAAAGAAGAAGTAAAGATCAGCCCCTGAAGCTAAGATTATTGTGTAATGTTAATTTTGAACTGAATCGTTTCTCTAAAATGAGTCGAATGAATCAATTCACTTTaacaaatgtaatgtttaaggAGTCGTTTTCCTTCTACGGATTATTCTAAAGCTTAAATGTGTTTCTGCAAATGGAGTTATTTCTGGATTTTCATtcaaatcaaatgaatcaaaacacTGAACTAATTTGTTCAAAAGAATCGACTCAGTAAAGTGAGTCATGAAGCCTGGTATGAATCTGAAGAATCTGAATAagtctttttgttttggttttattcGGTTTATTTGTGAACCTGTGAGAGATCTGGTGCAGTAAAACCGCTTTGTAGGAACCAGACGACGCTGTGAGGTGAATCCGCTGTTCCTCGGACgatcttttctctctgttttgtatgttttaaacACTTTTCTTATCGACGATGTGCATTTTGAGGACTGATTAAACTTGtacagagagacaaaaacaatACCAGGTGATATGCAATTGTTATATacgtatattatattatattatagtatattatattatattatattatatatttgtatgaaTAAATAGATATATGTCCGTGTGCACATCAGTGTCTTG

Function

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327145 lncRNA downstream 15050 3414868 ~ 3415140 (-) True G276049
TU327132 lncRNA downstream 57172 3372624 ~ 3373018 (-) True G276038
TU327127 lncRNA downstream 57858 3299257 ~ 3372332 (-) False rps16
TU327125 lncRNA downstream 57858 3363442 ~ 3372332 (-) False rps16
XR_003402473.2 lncRNA downstream 73757 3355454 ~ 3356433 (-) True LOC113523901
TU327261 lncRNA upstream 145951 3639967 ~ 3640783 (-) True G276153
TU327577 lncRNA upstream 265195 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA upstream 308377 3802393 ~ 3815365 (-) True G276342
TU327583 lncRNA upstream 318524 3812540 ~ 3813351 (-) True G276353
TU327616 lncRNA upstream 407246 3901262 ~ 3904931 (-) False G276384
XM_034312986.1 mRNA downstream 45267 3369680 ~ 3384923 (-) True rps16
XM_034312985.1 mRNA downstream 95173 3259018 ~ 3335017 (-) True ppp1r12a
XM_034313335.1 mRNA downstream 183194 3205288 ~ 3246996 (-) True pawr
XM_034312982.1 mRNA downstream 752158 2672021 ~ 2678032 (-) True LOC117599441
XM_034312981.1 mRNA downstream 760854 2668355 ~ 2669336 (-) True LOC117599440
XM_034313387.1 mRNA upstream 51060 3545076 ~ 3691686 (-) True ppfia2
XM_026909954.2 mRNA upstream 244868 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA upstream 244868 3738884 ~ 3755856 (-) True hcls1
XM_034313225.1 mRNA upstream 266100 3760116 ~ 3782783 (-) True golgb1
XM_034312987.1 mRNA upstream 304325 3798341 ~ 3811616 (-) True orc5
TU327062 other downstream 136400 3285837 ~ 3293790 (-) False ppp1r12a
TU327069 other downstream 228893 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 886559 2543147 ~ 2543631 (-) True LOC117599488
XR_004579903.1 other downstream 923096 2506587 ~ 2507094 (-) True LOC117599490
XR_004579918.1 other downstream 975109 2454252 ~ 2455081 (-) True LOC117599505
TU327175 other upstream 42981 3536997 ~ 3538743 (-) True G276075
XR_004580002.1 other upstream 71019 3565035 ~ 3571926 (-) True LOC117599595
TU327549 other upstream 242114 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 588262 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 803844 4297860 ~ 4300524 (-) True G276530

Expression Profile