RNA id: XM_034313366.1


Basic Information

Item Value
RNA id XM_034313366.1
length 2676
RNA type mRNA
GC content 0.43
exon number 20
gene id LOC113531956
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9350878 ~ 9359050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattttttttaatcattcctTACAGTAGGTGGGCAGTGAATGGGTTTGGAAGCTTTGCATTAGTCTCTCTAGTGCAAGTTATTATCAGTTTACTGCATAACATCTTAACTGAGATATGGACACTTCCAGAGATATTGGAAAGATCCAGTCAAAGAAGCAAGATGAGTATATCTCTTTAGATGGGAATAGCCTCACAACTGCTGATTTGGTCAGTTTGGGAAAAGGCCTTTATAAGATTAAGCTGAGTGCTGAGGCAGAGGAGCGCGTGATCAGAGCTAAAGATGTTATCGAGAAGATCATATCTGAAAAACAAGTTGTTTATGGAGTTAACACAGGATTTGGTAAATTTGCACGGACCGTCGTGGGGAAAGATCAACTCAAGGAGCTGCAGGAAAATCTGATCCGCTCACATAGTGCTGGAGTTGGACCCCCACTGAGTCCGGAGAGGACCCGGATGCTTCTTGCTCTCAGGATTAATGCCTTAGCCAAAGGTTATAGTGGCATTTCCTTGGAGACTCTTCATAAAATGGTGGCAGCCTTTAACGcctccTGTCTCTCCTGGGTTCCTGAGCAAGGGACAGTAGGGGCGAGTGGAGACCTGGCCCCTCTAGCTCACCTGGCTCTGGGGCTGATGGGAGAGGGACGCATGTGGTCACCACAGACTGGCTGGACTGATGCCACAACTGTACTAGAAGGACACGGTCTGACTCCAATATCACTGAAACCCAAAGAGGGGCTTTCTCTGATTAACGGGACTCAGATGATATCATCACTGGGTGCTGAGGCAGTAGAGAGAGCAGAAGCGATCACCCGGCAGGCTGATGTCATCGCTGCTCTCACTTTAGAGACACTGAAGGGAACCAACAAAGCTTTCGACTTTGATGTACATGCAGTGCGGCCTCACCCGGGTCAGATTTTAGTCGCCCAGAGATTTCGCTCGCTGCTTCATTCTGACTTCTTTCCCTCAGAAATCACAGATGAGAATTCCTACAGCAGAGTTCAGGATGCCTACACACTGCGATGCTGCCCTCAGGTGCATGGTGTAACCAATGACACGATTGCTTTTGTGAAGAAGATTCTCAACACTGAATTAAACAGTGCCACCGATAATCCTTTGGTATTTTCAGAACGAGGAATCACTATTTCAGGAGGAAACTTCCACGGTGAATATCCTGCTAAGGCTCTGGACTTCCTGGCTATAGGAGTGCATGAGCTGGCGAGTATTAGTGAGCGGCGCATCGAGAGGCTGTGTAATCCCTCACTCAGTAATCTCCCTGCCTTCCTTGTGAAGGAAGGGGGATTAAATTCAGGCTTTATGGTGgcccactgcactgctgctgccCTGGTGTCGGAGAATAAGGTTCTGTGCCACCCGGCCTCTGTGGACTCTCTGTCCACCAGTGCAGCTACAGAGGACCATGTGTCTATGGGGGGCTGGGCAGCCAGAAAGGCCCTGAAGGTGGTCGAGCATGTGGAGCAGGTCCTTGCCATTGAGTTACTCGCCGCCTGCCAGGCTCTGGAGTTCCACCGGCCTTTAAAGACCACAGCTCCTCTGGAGAAGGTCTACGAGCTGCTGCGCTCTGTAGTCAGGCCCTGGGACAAAGACCGCGTCATGAGCTGTGATATCAAAACAGCTCACCAACTCCTCCTAGAGGAAAAGgtgtggaAGGCAGTGCTACCATTCATGGACCAGTACAAGGAGATTGACCACCAACATCTCACTTCTCCTCCTGCTCACATTCATGTTTAAAAAGCTTTCTATTCATACATAAACTTTATTCAGCActcaaaatgaatgaaatatcaATCACTCAGACATTATTTGGATGTCATCTGAGGTGTCAACCTGAAAAAGATTAACACAATTTTCAGTGTTtgtactaccaccaccatgcttcttTGCAGCACTTTTTAATATGACAGGCATGTGACTATGATTGGCTACCCAACTGTCTTGAATAACAATTGTAAGTCAAACATTCAGCAGAAATTTCAGCAGCTGTCTGAGGTGTTAGATCATCATGTTATGCTATGACAGTTTTcgtaatatatattataacagcTTTAACCTACGCTAATTAGAGAGCaattagcaaaaaaatatatgacaTGATATAACCTGACATCAAATGTTATGAAGTTATAATTACATTTCCGGTAATGGTGACATGGCACTTTTATATTACTGCCTATCAAGTGTTATGACAACTCATTACAGCAAATGAGATCAGGCATGATATGTTTTTGACAAGactaaatactgtatgtgtcatGATGCACGTGTTAACTAAAGTGTTACCAAGAAAATCTCTAAATCATGAACTAACCATAACAGTGGACAGAGGGAGGTGATAAATTGAGATGGTTGCTTTCTCAGAATTAGAAATGTGATATTAGATGAGATTttgtaatattgtattttatctcagctttactttttaatctgaagaatGATGTTGGAAATTTGCTATTAGATAGCTTTGGCACAAATCATCTTTTCTCATTTGAGATTAATGGTAACAGTCACTGAAaagaataaatacaataaagtaagcaaaatgtaaaacaattattattgaaaatgatTCTGTATTTCACGAAATTAAATTTGGATTTtccgatgatgatgatgatgatgatgatgaagtgagCAGAGTAAAGGTTTCATGCAGCAAA

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331392 lncRNA downstream 13348 9336336 ~ 9337530 (-) True G279588
TU331172 lncRNA downstream 156875 9193616 ~ 9194003 (-) True G279382
XR_004579873.1 lncRNA downstream 652087 8698430 ~ 8698791 (-) True LOC117599455
TU330836 lncRNA downstream 738536 8612118 ~ 8612342 (-) True G279064
TU330707 lncRNA downstream 960319 8389498 ~ 8390559 (-) True G278963
TU331405 lncRNA upstream 27083 9386133 ~ 9387789 (-) False G279592
TU331406 lncRNA upstream 27083 9386133 ~ 9389747 (-) True G279592
TU331436 lncRNA upstream 125043 9484093 ~ 9484948 (-) True G279620
TU331437 lncRNA upstream 126017 9485067 ~ 9485769 (-) True G279621
TU331440 lncRNA upstream 158936 9517986 ~ 9519727 (-) True G279624
XM_026923675.2 mRNA downstream 3832 9338768 ~ 9347046 (-) True LOC113532331
XM_026923676.2 mRNA downstream 3835 9338768 ~ 9347043 (-) False LOC113532331
XM_026923677.2 mRNA downstream 3835 9338768 ~ 9347043 (-) False LOC113532331
XM_026922951.2 mRNA downstream 59469 9289095 ~ 9291409 (-) True parietopsin
XM_026922697.2 mRNA downstream 161943 9167589 ~ 9188935 (-) True tspan12
XM_026922643.2 mRNA upstream 32979 9392029 ~ 9423268 (-) True mkln1
XM_026923453.2 mRNA upstream 200861 9559911 ~ 9593266 (-) True asb13a.2
XM_026923304.2 mRNA upstream 235408 9594458 ~ 9600035 (-) True asb13a.1
XM_026923063.2 mRNA upstream 241527 9600577 ~ 9615300 (-) True gdi2
XM_034312996.1 mRNA upstream 258358 9617408 ~ 9623595 (-) True ankrd16
TU331209 other downstream 142315 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 541540 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1131198 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1282801 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1757070 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 263483 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 910707 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1636055 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1879885 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 2227254 11586304 ~ 11588024 (-) True G281074

Expression Profile