RNA id: XM_034313387.1


Basic Information

Item Value
RNA id XM_034313387.1
length 5866
RNA type mRNA
GC content 0.48
exon number 33
gene id ppfia2
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3545076 ~ 3691686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccactctctccactctctccactctctccgCTCTCTCACACTGGGccgttttttttccttccacacAGTGATGTGGATTTCAGCAGGAGCACAATGATGGAGCTCAGAGGATTAAGATCAGGATCAGGAATGTGAAAGATGCCCGCTGTGGATCTGGGATTCAGTCGGGATTGGGTCGGAGAACCGCACAGCTGGGAATACTGATCTACCGGAGGAGACAGAGGACGAGGAGGAAGCAGTAAAGATGATGTGCGAGGTGATGCCCACGATCAGCGAGGACACGGCCATGAGCCAGCGAGGTTCTCAGAGCAGTTCCTCGGACCCGGACTCGCACTTTGAGCAGCTGATGGTGAACATGCTGGACGAGCGAGACCGTCTCCTGGACACGCTCCGAGAGACGCAGGAGAGCCTCGCCCTCGCCCAGCAGCACCTGCAGGACGTCATGTACGACCGGGACTCGCTACAGCGCCAGCTCAGCTCTGCACTgccacagGAGTTTGCGGCCCTGACGAAAGAGCTGAATGCCTGTCGAGAACAGCTGctggagaaagaggaggagatcTCAGAGCTCAAGGCTGAGAGGAACAACACCAGGctGCTGCTGGAGCATTTGGAGTGTTTGGTGTCTCGTCACGAGCGCTCCCTCAGGATGACGGTGGTGAAGCGACAGGCTCAGTCTCCATCAGGAGTCTCCAGCGAGGTGGAAGTTCTCAAAGCTCTCAAATCCTTGTTCGAGCATCACAAAGCTCTGGATGAAAAGGTGAGAGAGAGGCTACGCGTGTCACTCGAAAGAGTCTCTGCCTTGGAGGAGGAGCTAACTGCTGCCAATCAGGAGattgtTGCCTTAAGGGAACAAAATGCACACATTCAGAGAAAAGTGGCATCAGGTGAAGGAGCTGAGGATCTGCTCGAAGGAGACGCACAGAAAGTCCATGGCAAGcgctTGTCAAACGGCTCGATGGAGTCCGGAGACGAGGCAAGTCAGGTGGTGGAGCTGCAGGAACTTCTGGAGAAACAGAATTATGAACTGACCCAGATGAAAGAGAGGATGTCATCTCTGTCGTCTCGCGTTTCTGAGGTGGAGCAGGAGCTCGAGACGGCGCGTAAAGACCTCATCAAGAGTGAAGAGATGAACACCAAATACCAGAGAGACATCAAAGAGgccatGTGTCAGAAGGAGGACATGGAGGAGAGGATCGTGACTCTGGAGAAACGTTACCTCAGCGCTCAGAGAGAGTCCACTTCACTGCACGACATCAGTGACAAACTGGAGAACGAACTGGCCAATAAGGAGGCTTTTCTTCGACAGatggaGGAGAAGAACAGGCAGCTGCAGGAGAGGTTGGAGTTGGCTGAACAGAAGCTGCAGCAGACGATGAGGAAAGCAGAAACTCTGCCGGAGGTGGAGGCAGAACTCGCACAGAGAATAGCAGCACTCACCAAGgCAGAGGAAAGACATGGCAGTATTGAGGAACGAATGAGGCATCTGGAAGGACAGCTGGAGGAGAAAAACCAGGAACTTTTACGGGCTCGtcagagagagaagatgaacGAGGAACACAACAAGCGTCTATCAGACACGGTGGATCGTCTCCTCACGGAATCAAACGAGCGTTTACAGCTCCATCTGAAGGAGAGGATGGCTGCTCTGGAGGAGAAGaatgtaTTAATTCAAGATTCAGAGAATTACAGGAAGCAGCTGGAAGACTCCATTCATGAAAAGtcCCAGTTGGCAGAGGAGATGGACAAAATGAGAGCTGAACTCGATCAGTTCAGAATGAGGGCGGAGCCAACACTGTCACGgtctcATCTGGATGCCTCCTCAGATCTGCGTTACTCTCTTGGTTCTCTTGCTGAGTCTCAATCTGATTATCGCTCCACTAAAGTGATGCACCGAACAAGAAGAGGACGCATGGGGCTACGCCGAGACGAAcagaagGCGAAGTCTCTGGGCGAACATGAGTGGCGCTCGCAGCAGCTCGGCGTGTTGGGCTCGCACCCGTTCGAGAGCGATACCGAGATGTCAGACATCGACGATGACGATCGGGAGACTTTGTTCAGCTCGATGGATTTGCTCTCGCCCAGCGGACATTCAGACGCTCAGACCCTCGCCATGATGCTGCAGGAACAACTCGACGCTATCAACAAAGAGATACGgctgATTCAGGAGGAGAAGGAGTGTACGGAGCAGCGGGCGGAGGAGATTGAACACCGTGTAGCCAGTGTGAGTTTAGAGGGCTTGAATCTGGCGCGTTCGCTCATCACTGCCTCAGCTACAGCGTCATCGCTcgcatcatcatcaccacccaGCGGGCACTCgtcccccaaacacacaccccgcAGCCCCGCCCGGGACATGGAGCGCATGGGGGTCATGacactgCCCAGTGACCTGAGGAAACACCGGAGAAAGatcGCAGCCGTGGACGAGGACGGCAGAGAGGACAAAGCCACCATAAAGTGTGAGACGTCTCCTCCTCCAACGCCTCGTCAAGTCcgcatgacacacacactgcctgctTCCTCTCACAACGACGCACGtctGGCCGCAGCGTTAGAGGCTGATGCAGCTCTGAGCAGTGTAGCCAGCAGTCAGGACTCGCTCCATAAACAACCGAAGAAGAAAGGCATCAAATCATCCATCGGCCGCTTGTTTggcaaaaaagagaaaggacgACTGGGACACATGGGAAAAGAGATGATGGGACCGGGACCAgGTGTTTCAGATGTGGAGTTGCTTGCTCAGGAAATGGCTGTGGGGAAACTGGGCACTCAGGCCGAGAAAGACCGCCGCATAAAGAAGAACGGGCATGAGTTGCTGGAGGAGGCGAGGAGGAAAGGATTGCCTTTCGCGCAGTGGGATGGTCCTACTGTTGTTGCATGGCTGGAGctgtggtTAGGAATGCCGGCGTGGTACGTGGCAGCGTGCCGGGCGAATGTGAAGAGCGGCGCCATCATGTCGGCTCTGTCTGATACGGAGATCCAGCGTGAGATCGGCATCAGTAACCCGCTGCACCGCCTCAAACTGCGTCTCGCCATCCAGGAAATGGTGTCACTGACCAGTCCGTCGGCCCCGCCCACTTCCCGAACTCCGTCAGGCAATGTGTGGGTGACACATGAGGAGATGGAAACACTCGCAGCTCCATCTAAAACGAAGTCAGAGTCTGAAGAAGGAAGCTGGTCTCAGacaTTAGCATACGGGGACATGAATCATGAGTGGATAGGTAACGAGTGGCTGCCCAGTCTCGGCCTACCTCAGTATCGCAGCTACTTCATGGAGTGTCTGGTGGACGCAAGAATGCTCGATCACCTGACCAAGAAGGACCTCCGAGTTCATCTCAAAATGGTGGACAGCTTCCACAGGACGAGTCTTCAGTACGGGATCATGTGTCTGAAAAAGCTCAACTACGACCGCAAAGAGCTGGAGAGACGGCGAGAGAACAGCCAGCATGAGATGagagacgtCCTGGTATGGATAACGAAAGGCAGGATTCGCTGTTCTCAGAGCATCGGGTCTCCTCCGCGATCACGCAACATCCTTTGCTAGAAAGCTGGAGTTCACGGAGCTGATCGCCTCTCTACATAACACTCACACTACAGCAGCCTCCTCCCTCTGTTACTGCAGATCCCCACCCAGAACACTCAgGCTCGTCAGATTCTGGAGAGAGAATATAACAACCTGCTGGCGTTGGGTACAGAGAGACGGTTGGAcgagGATTTCCGTGGCCCATCGTGGAGGAGACAGTTTCCCCCACGTGATATTCACGGGATCAGTATGATGCCTGGATCAGCAGAGACACTGCCGGCTGGGTTTCGCCTCAcaacatcagcacacacacaccgaattCCAGCAGACGAGGTTGGACAGTTCCACTGTGAGGACATACTCATGCTGAGAGAGGGACAACAGGGACTCACAactccGTGTTGCGTAGTTGATTGTGATGGTGACGTCGGGGAACAGAgatctgctcacacacactgccaagAGAACACGCGTTGCCCGGACAGATGGGGCCAAAATGTAAAGCGCCAAGGTGCTCTCCTGCCCCGCCCACATGCCCCGCCCACATGCCCCACCTCCTGCCCCGCCCTCTCTACACCAGAGTGACTGTACAGGATTATAGATACACAGTTTTATATACAAATCTCTATCATCTACAGACACACTGCTGTATacaacactgactttattcctGCTGACTCTGTGCACATTTAACGTCacgcttttatttctttcttccacacctcctgctcacacacatgcacatgcgcgcacacacacacacacacgcacacacacacctgactcaaACCGCCGCGGTCAGTGTGTTAGAAGAGCATACAGATGAATGTGTGAAGGTGTAAGAGGTTCAACACTGCTGCTTTAAGAAACTACGTGCTGTTAGAGTTTTAAATTCCAAGTGCACTACCACAAactgttttaattattaaagttattatatatatatatatatataaaaatgaattattcacTAATAAAGTTATGTGATCTGTTATTggataaattaaataacacgTAGAGACAGCATTAGCTGTTTTAGTTTTAACAAATCTTTTAACTTAAAAGAtatagtatttaattttatttggatATTAACGAGTTGATAATGTTATACTGCCACCGACAGAGTGATCAGCAGTAGCTACACGACATGTTTATAtcacataaataataattttattagtcACACTTTGTTCCATGGTTGTTTTTCAGCTCTATTGTTGCAAGATTTTTGACCCCTTTTGGCTTCCGTACGCCACACAACACTGACACCTCGTTTTTTTAATGCCTTGAAcattctccatcttttttttattctttttgatTTTCCTGGTTCAATTCTCACTAACAGAAATCATTCCTGTAGTTCAAGGTGTTCCACACGGTTCTGTTCTGGGCCCgtctcatttttattaattacactaCTCTGAGGTCATGTTACAATGTGGCATCACAGTGCTAATTTCTACTGTTATGCCACTGATGCCTAGATTTACATTAATATGGACTCTTCCACATCCCAGCTGAACCATACTAACATTAAGCTAGCGAAGAAAGTGACGTAACTAAAGCTATGCTAGCAAAGTAAGTAAAGTTACCTAACTAAAGCTAGCAAATCAAGTAATGTTACTAAAGTTAAGCTAAAAGGAAGTAACATTACAGACGTTAAGACAGTAAAGCAAGTAACATTACTAAAGTTAAGCTAagtaatatttcaaaacaaagtaataTTATAAGTGAGTGCAGCAAGTAATGTTACTAAACCTAAAATAAAAGGAAGTAACATTACAGACATTAAGTGAAGAAAGTAACATTGCAAAATTTACACTAATACAGTTTGTAATATTCCATAACTAAATCAAGTAATGTTACTAAATTTAAACTAAAAGCAAGTAGTACAGAAGCTAAGCTAGTGAAGAAATTAACATTACTAAGATTAggctagtaaaaaaaaaaggatgtaacAGTACCGAGGTTAAGACAATAAAGCAAGTTGTTGTAATGTTACAGAAGTTAAGCTAGTAACATAAATAATATTGCAAAACAAGCAAAGTAATATCACAAGCTAGTGAAACAAGAAAATGTTACTAAGCTTAAGATAAAAGGACGTAACAGTACAGAAATTAAGCTAGTGAAGAAACATTGCTAGAAGAAACTTTGAAGAAATAGTATGTAATATTACATAACTAAATCAAATAACTTTACAAAATTTACGCTAAAAGGAAGTAGTACAGAAGCTAAGCTAgtgaaaaaattaatgttaCTAAGATTAGGCTAGTAAAGTGATATTTCAAAACCAGCTAGTAAATCAAAGTTTCTACTGGCTTGTCAAGCTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327145 lncRNA downstream 129936 3414868 ~ 3415140 (-) True G276049
TU327132 lncRNA downstream 172058 3372624 ~ 3373018 (-) True G276038
TU327127 lncRNA downstream 172744 3299257 ~ 3372332 (-) False rps16
TU327577 lncRNA upstream 67525 3759211 ~ 3829402 (-) False golgb1
TU327559 lncRNA upstream 110707 3802393 ~ 3815365 (-) True G276342
TU327583 lncRNA upstream 120854 3812540 ~ 3813351 (-) True G276353
TU327616 lncRNA upstream 209576 3901262 ~ 3904931 (-) False G276384
TU327618 lncRNA upstream 209576 3901262 ~ 3902898 (-) True G276384
XM_034313336.1 mRNA downstream 51060 3430190 ~ 3494016 (-) False lin7a
XM_034313337.1 mRNA downstream 51063 3430190 ~ 3494013 (-) False lin7a
XM_034312986.1 mRNA downstream 160153 3369680 ~ 3384923 (-) True rps16
XM_034312985.1 mRNA downstream 210059 3259018 ~ 3335017 (-) True ppp1r12a
XM_034313335.1 mRNA downstream 298080 3205288 ~ 3246996 (-) True pawr
XM_026909954.2 mRNA upstream 47198 3738884 ~ 3755857 (-) False hcls1
XM_026909953.2 mRNA upstream 47198 3738884 ~ 3755856 (-) True hcls1
XM_034313225.1 mRNA upstream 68430 3760116 ~ 3782783 (-) True golgb1
XM_034312987.1 mRNA upstream 106655 3798341 ~ 3811616 (-) True orc5
XM_034313181.1 mRNA upstream 165829 3857515 ~ 3906653 (-) True kmt2e
TU327175 other downstream 6333 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 51060 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 251286 3285837 ~ 3293790 (-) False ppp1r12a
TU327069 other downstream 343779 3142534 ~ 3201297 (-) True G275981
XR_004579901.1 other downstream 1001445 2543147 ~ 2543631 (-) True LOC117599488
TU327549 other upstream 44444 3736130 ~ 3737077 (-) True G276340
TU327682 other upstream 390592 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 606174 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 665853 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 669646 4361332 ~ 4361942 (-) True LOC117599551

Expression Profile