Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579877.1 |
| length | 579 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113532316 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 19580854 ~ 19588244 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU337984 | lncRNA | downstream | 20235 | 19560412 ~ 19560619 (-) | True | G285331 |
| XR_004579862.1 | lncRNA | downstream | 150295 | 19429170 ~ 19430559 (-) | True | LOC117599445 |
| TU337930 | lncRNA | downstream | 172049 | 19408270 ~ 19408805 (-) | True | G285289 |
| TU337929 | lncRNA | downstream | 174726 | 19405903 ~ 19406128 (-) | True | G285288 |
| TU337928 | lncRNA | downstream | 175537 | 19405079 ~ 19405317 (-) | True | G285287 |
| TU338031 | lncRNA | upstream | 93887 | 19676840 ~ 19677595 (-) | True | G285361 |
| TU338029 | lncRNA | upstream | 95547 | 19678500 ~ 19679275 (-) | False | rap1b |
| TU338032 | lncRNA | upstream | 127944 | 19710897 ~ 19719135 (-) | True | G285362 |
| TU338109 | lncRNA | upstream | 333656 | 19916609 ~ 19920334 (-) | True | G285437 |
| TU338095 | lncRNA | upstream | 370660 | 19953613 ~ 19960579 (-) | True | G285425 |
| XM_026923712.2 | mRNA | downstream | 61246 | 19516354 ~ 19519608 (-) | False | cbll1 |
| XM_026923714.2 | mRNA | downstream | 61348 | 19516354 ~ 19519506 (-) | False | cbll1 |
| XM_034313359.1 | mRNA | downstream | 61348 | 19516354 ~ 19519506 (-) | False | cbll1 |
| XM_026923715.2 | mRNA | downstream | 61354 | 19516354 ~ 19519500 (-) | False | cbll1 |
| XM_034313358.1 | mRNA | downstream | 61354 | 19516354 ~ 19519500 (-) | False | cbll1 |
| XM_034313224.1 | mRNA | upstream | 50469 | 19633422 ~ 19664949 (-) | True | cfap54 |
| XM_026922602.2 | mRNA | upstream | 88572 | 19671525 ~ 19676383 (-) | True | mcat |
| XM_026923047.2 | mRNA | upstream | 95330 | 19678283 ~ 19735232 (-) | False | rap1b |
| XM_026923046.2 | mRNA | upstream | 95330 | 19678283 ~ 19735232 (-) | True | rap1b |
| XM_034313287.1 | mRNA | upstream | 276548 | 19859501 ~ 19868173 (-) | True | dyrk2 |
| trnae-cuc_38 | other | downstream | 1368461 | 18212322 ~ 18212393 (-) | True | trnae-cuc_38 |
| XR_003403330.2 | other | downstream | 1392856 | 18156824 ~ 18187998 (-) | True | cald1a |
| trnaa-ugc_14 | other | downstream | 1488310 | 18092473 ~ 18092544 (-) | False | trnaa-ugc_14 |
| trnaa-ugc_13 | other | downstream | 1490232 | 18090551 ~ 18090622 (-) | True | trnaa-ugc_13 |
| trnaa-ugc_11 | other | downstream | 1497000 | 18083783 ~ 18083854 (-) | True | trnaa-ugc_11 |
| TU338301 | other | upstream | 730114 | 20313067 ~ 20320050 (-) | True | G285607 |
| trnaa-ugc_16 | other | upstream | 839448 | 20422401 ~ 20422472 (-) | True | trnaa-ugc_16 |
| XR_004579970.1 | other | upstream | 1877873 | 21460826 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579971.1 | other | upstream | 1877873 | 21460826 ~ 21471056 (-) | True | LOC113544587 |
| XR_003404518.2 | other | upstream | 1877874 | 21460827 ~ 21471100 (-) | False | LOC113544587 |
