RNA id: XR_003403332.2


Basic Information

Item Value
RNA id XR_003403332.2
length 993
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC113532334
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15209348 ~ 15213255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTATCAGTGCAGGTAACCACCAACAAGAAAACACAGATCCCCACACATACATCTCCTATATTAAGTCAGTTTGATTCACAAACGAGtACACAGGGTCACCGGGTAGCCTGGAGCCacacacaatttggaaatgctaatcagcctacaacggatgtctttggactgggagaggaagCTGGAATGCCCAGAAGAAActcctgaagcacagggagaactcCGCAcacaaacccccaaccccagaggtgcaaggcgAACGTGCTAACCAATAAGCCACCTGTCCTTGCACACTAGAAGACAACCATAGGTCTATTGCCTGATGTAGATGAAGGCCCTAGCAGCTGTGAGGAAGCTTTAATGTGACTTTCCAGCCAGCAAAATTAATGTGATAAACAGATATTTGtatgtttgatgtttgtttgATGTTTGTTTGAAAATGGACAGGACAAGAAAAATATTGATCAGGGAGGCTACCAAGATATCTTTCTCACAGGAATTAGTCACTCGCTGCATGGAACAACAATCTCCTGCATCCTGCATTTCTGGATAAGAATAGGGTGTCACAATGAAGGCATTTCTCCAAAAATGTGTTATCATCTGATAACACAATTCTAGATTGTTTGAATTTGGTGactgaagataaatgattaaataatatgaAAGAGGTTGTCCCTTTCTGCCTCTTTCACTGACATTTATTAGCCAAAAATGTCACAGAGCTCAGACACTGGTTATCTATaaattagagatggcactgaaTATTTATCTGAAAATGAGAGAATCTGTTTGTTTGGTCGGTGTAAATGTTCAGTCATTAGATTAAAAACACTGgaagaaataaaattcatttaaatttcacACAAATGCATATTCCCTGGACTTTTAAGCAGTTAACATTTCAAGATGACGGAACTACATTACGTTATGATATAGATCAAATCCAGATCTAGCCTATTTAACTACACATATTTTAGACATTGAGATCTGTGAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335044 lncRNA downstream 103353 14812922 ~ 15105995 (-) True G282718
TU334999 lncRNA downstream 469911 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 478344 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 478344 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 818791 14389823 ~ 14390557 (-) True G282410
TU335298 lncRNA upstream 57739 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 137451 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 174693 15387948 ~ 15390101 (-) True G283022
TU335461 lncRNA upstream 303969 15517224 ~ 15521690 (-) True G283081
TU335610 lncRNA upstream 541062 15754317 ~ 15754605 (-) True G283218
XM_034313143.1 mRNA downstream 25273 15139925 ~ 15184075 (-) True LOC113531972
XM_026923156.2 mRNA downstream 70871 15122734 ~ 15138477 (-) False LOC113532053
XM_026923534.2 mRNA upstream 681 15213936 ~ 15236310 (-) True LOC113532243
XM_034313258.1 mRNA upstream 23287 15236542 ~ 15263393 (-) False LOC113532267
XM_026923565.2 mRNA upstream 23287 15236542 ~ 15263393 (-) True LOC113532267
XM_034313283.1 mRNA upstream 112118 15325373 ~ 15336933 (-) False LOC113532250
XM_034313284.1 mRNA upstream 112118 15325373 ~ 15333836 (-) False LOC113532250
TU335292 other downstream 31735 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 2628285 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3549021 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3621324 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3949956 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 1745269 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1890310 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2765530 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2765530 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 2857492 18070747 ~ 18082361 (-) False tmem209

Expression Profile