Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403336.2 |
| length | 544 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC113532372 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 16294880 ~ 16296190 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU335902 | lncRNA | downstream | 54979 | 16239515 ~ 16239901 (-) | True | G283503 |
| XR_004579867.1 | lncRNA | downstream | 212759 | 16078768 ~ 16082121 (-) | True | LOC117599449 |
| TU335704 | lncRNA | downstream | 252301 | 16042362 ~ 16042579 (-) | True | G283307 |
| TU335610 | lncRNA | downstream | 540275 | 15754317 ~ 15754605 (-) | True | G283218 |
| TU335461 | lncRNA | downstream | 773190 | 15517224 ~ 15521690 (-) | True | G283081 |
| TU335937 | lncRNA | upstream | 104731 | 16400921 ~ 16401948 (-) | False | alg12 |
| TU335947 | lncRNA | upstream | 152249 | 16448439 ~ 16448775 (-) | False | G283546 |
| TU335948 | lncRNA | upstream | 152249 | 16448439 ~ 16449766 (-) | True | G283546 |
| TU335946 | lncRNA | upstream | 152827 | 16449017 ~ 16449766 (-) | False | G283546 |
| XR_004579992.1 | lncRNA | upstream | 322522 | 16618712 ~ 16619718 (-) | True | LOC117599589 |
| XM_034313186.1 | mRNA | downstream | 515936 | 15756306 ~ 15778944 (-) | False | cerk |
| XM_026923051.2 | mRNA | downstream | 515938 | 15756306 ~ 15778942 (-) | True | cerk |
| XM_026923836.2 | mRNA | downstream | 731164 | 15554273 ~ 15563716 (-) | False | srr |
| XM_034313341.1 | mRNA | downstream | 733194 | 15554273 ~ 15561686 (-) | True | srr |
| XM_026923726.2 | mRNA | downstream | 749997 | 15539057 ~ 15544883 (-) | True | alg10 |
| XM_034313343.1 | mRNA | upstream | 73479 | 16369669 ~ 16389481 (-) | True | brd1a |
| XM_034313344.1 | mRNA | upstream | 105017 | 16401207 ~ 16406863 (-) | True | alg12 |
| XM_026922599.2 | mRNA | upstream | 153596 | 16449786 ~ 16452939 (-) | True | LOC113531729 |
| XM_026922749.2 | mRNA | upstream | 272505 | 16568695 ~ 16581436 (-) | True | il17rel |
| XM_026922863.2 | mRNA | upstream | 325913 | 16622103 ~ 16647682 (-) | False | LOC113531895 |
| TU335292 | other | downstream | 1117267 | 15174348 ~ 15177613 (-) | False | LOC113531972 |
| XR_003403346.2 | other | downstream | 3713817 | 12580923 ~ 12581063 (-) | True | LOC113532438 |
| TU333129 | other | downstream | 4634553 | 11657890 ~ 11660327 (-) | True | G281092 |
| TU333108 | other | downstream | 4706856 | 11586304 ~ 11588024 (-) | True | G281074 |
| TU332827 | other | downstream | 5035488 | 11238935 ~ 11259392 (-) | True | vegfab |
| TU336422 | other | upstream | 662334 | 16958524 ~ 16964887 (-) | True | phf21b |
| trnar-ccg_5 | other | upstream | 807375 | 17103565 ~ 17103637 (-) | True | trnar-ccg_5 |
| TU337036 | other | upstream | 1682595 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
| TU337037 | other | upstream | 1682595 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
| XR_004580005.1 | other | upstream | 1774557 | 18070747 ~ 18082361 (-) | False | tmem209 |
