RNA id: XR_003403346.2


Basic Information

Item Value
RNA id XR_003403346.2
length 141
RNA type ncRNA
GC content 0.46
exon number 1
gene id LOC113532438
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12580923 ~ 12581063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTTGCGCAGTGGTAGTATCGTAGCCTATGAGGTTTATCCGAGGCGCGATTATTGCTAGTTGAAAACTTTACCCAATACCCCGCCTTGACGACTTGAAATATAGTCGGCTATGGCAATTTTTGACGGTCTCTACGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 103294 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 121831 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 211658 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 326768 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 486864 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 565219 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 587612 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 678089 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 739110 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 739110 13320173 ~ 13321414 (-) True G282006
XM_026923288.2 mRNA downstream 969 12570068 ~ 12579954 (-) True cmasa
XM_026923775.2 mRNA downstream 63240 12496039 ~ 12517683 (-) False shisal1a
XM_026923776.2 mRNA downstream 63247 12488395 ~ 12517676 (-) True shisal1a
XM_026923777.2 mRNA downstream 63247 12496039 ~ 12517676 (-) False shisal1a
XM_026923774.2 mRNA downstream 63247 12496039 ~ 12517676 (-) False shisal1a
XM_026923289.2 mRNA upstream 3774 12584837 ~ 12588680 (-) True kcnj8
XM_026922806.2 mRNA upstream 11024 12592087 ~ 12636416 (-) False abcc9
XM_026922804.2 mRNA upstream 11024 12592087 ~ 12636416 (-) True abcc9
XM_026922809.2 mRNA upstream 11024 12592087 ~ 12633220 (-) False abcc9
XM_026922808.2 mRNA upstream 11024 12592087 ~ 12633220 (-) False abcc9
TU333129 other downstream 920596 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 992899 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1321531 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1573780 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2284802 10269757 ~ 10296121 (-) False LOC113532274
TU335292 other upstream 2593285 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4377461 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4522502 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5397722 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 5397722 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile