Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579890.1 |
| length | 292 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 5 |
| gene id | LOC117599477 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 900773 ~ 901840 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579904.1 | lncRNA | downstream | 22522 | 877038 ~ 878254 (-) | True | LOC117599491 |
| XR_004579925.1 | lncRNA | downstream | 53795 | 845933 ~ 846981 (-) | True | LOC117599512 |
| XR_004579906.1 | lncRNA | downstream | 59508 | 840628 ~ 841268 (-) | True | LOC117599493 |
| TU326148 | lncRNA | downstream | 115923 | 758942 ~ 784853 (-) | True | G275203 |
| TU326147 | lncRNA | downstream | 118566 | 756400 ~ 782210 (-) | True | G275202 |
| TU326381 | lncRNA | upstream | 195305 | 1097145 ~ 1313535 (-) | True | G275382 |
| TU326392 | lncRNA | upstream | 243765 | 1145605 ~ 1148764 (-) | True | G275393 |
| XR_004579945.1 | lncRNA | upstream | 339527 | 1241367 ~ 1241904 (-) | True | LOC117599532 |
| XR_004579887.1 | lncRNA | upstream | 359802 | 1261642 ~ 1262710 (-) | True | LOC117599476 |
| XR_004579888.1 | lncRNA | upstream | 359806 | 1261646 ~ 1262710 (-) | False | LOC117599476 |
| XM_034313113.1 | mRNA | downstream | 206293 | 686036 ~ 694483 (-) | True | LOC113543469 |
| XM_034313112.1 | mRNA | downstream | 206293 | 686036 ~ 694483 (-) | False | LOC113543469 |
| XM_034313108.1 | mRNA | downstream | 217701 | 663725 ~ 683075 (-) | False | LOC117595727 |
| XM_034312963.1 | mRNA | upstream | 3407 | 905247 ~ 906730 (-) | True | LOC117599425 |
| XM_034312964.1 | mRNA | upstream | 5390 | 907230 ~ 907847 (-) | True | LOC117599426 |
| XM_034313122.1 | mRNA | upstream | 273470 | 1175310 ~ 1177234 (-) | True | LOC117599470 |
| XM_034312967.1 | mRNA | upstream | 340298 | 1242138 ~ 1255186 (-) | True | LOC117599427 |
| XM_034312968.1 | mRNA | upstream | 361909 | 1263749 ~ 1297899 (-) | True | LOC117599428 |
| XR_004579897.1 | other | downstream | 30301 | 869990 ~ 870475 (-) | True | LOC117599484 |
| XR_004579923.1 | other | downstream | 269389 | 629064 ~ 631387 (-) | True | LOC117599510 |
| TU326089 | other | downstream | 288825 | 609003 ~ 611951 (-) | False | LOC117599466 |
| XR_004579946.1 | other | downstream | 299747 | 597414 ~ 601029 (-) | True | LOC117599533 |
| XR_004579942.1 | other | downstream | 313958 | 583198 ~ 586818 (-) | True | LOC117599529 |
| XR_004579907.1 | other | upstream | 230248 | 1132088 ~ 1132569 (-) | True | LOC117599494 |
| XR_004579908.1 | other | upstream | 380614 | 1282454 ~ 1282934 (-) | True | LOC117599495 |
| TU326402 | other | upstream | 392300 | 1294140 ~ 1295377 (-) | False | LOC117599428 |
| XR_004579909.1 | other | upstream | 486356 | 1388196 ~ 1388678 (-) | True | LOC117599496 |
| XR_004579902.1 | other | upstream | 509291 | 1411131 ~ 1411615 (-) | True | LOC117599489 |
