RNA id: XR_004579905.1


Basic Information

Item Value
RNA id XR_004579905.1
length 328
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC117599492
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 530099 ~ 530740 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgacatctcacaatcaaccttatcttactttaagcttctgaaatccctcttatcaaatttatcaaagCTTCTTTGGATGAGGATTTTAttgagtataaatgtgtttaaaaaacccaaaacaaacaaattgttctttttccagtaaagtctgggattggagaaaaggctgagtattatgatgatgtcatcgacaccagtgacttcataagtgaTACAGGAAGAGTTGACCCACCAGAGGACTACGATGATGCCGTCACTGCTGGACCGATCCCTGATAACGTGGatgaggatgaagcagagaattatgatgacgccattacagctga

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326075 lncRNA downstream 12057 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA downstream 12057 514984 ~ 518042 (-) False LOC113532194
TU326078 lncRNA downstream 12057 514984 ~ 518042 (-) False LOC113532194
TU326079 lncRNA downstream 12057 514984 ~ 518042 (-) False LOC113532194
TU326080 lncRNA downstream 12057 514984 ~ 518042 (-) False LOC113532194
XR_004579934.1 lncRNA upstream 2086 532826 ~ 533618 (-) True LOC117599521
TU326100 lncRNA upstream 172591 703331 ~ 704000 (-) True G275167
TU326102 lncRNA upstream 172591 703331 ~ 704306 (-) False G275167
TU326103 lncRNA upstream 173030 703770 ~ 705100 (-) True G275168
TU326104 lncRNA upstream 177591 708331 ~ 718266 (-) True G275169
XM_034313120.1 mRNA downstream 5074 516562 ~ 525025 (-) False LOC113532194
XM_034313121.1 mRNA downstream 5074 516562 ~ 525025 (-) False LOC113532194
XM_034313118.1 mRNA downstream 5074 516562 ~ 525025 (-) False LOC113532194
XM_034313117.1 mRNA downstream 5074 516562 ~ 525025 (-) False LOC113532194
XM_034313119.1 mRNA downstream 5074 516562 ~ 525025 (-) False LOC113532194
XM_034313106.1 mRNA upstream 29967 560707 ~ 629004 (-) True LOC117599466
XM_034313108.1 mRNA upstream 132985 663725 ~ 683075 (-) False LOC117595727
XM_034313110.1 mRNA upstream 132985 663725 ~ 683075 (-) False LOC117595727
XM_034313107.1 mRNA upstream 132985 663725 ~ 683075 (-) True LOC117595727
XM_034313113.1 mRNA upstream 155296 686036 ~ 694483 (-) True LOC113543469
TU325948 other downstream 161065 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 276282 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 384059 144583 ~ 146040 (-) True G274979
TU326084 other upstream 5706 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 52458 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 66674 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 78263 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 98324 629064 ~ 631387 (-) True LOC117599510

Expression Profile