Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579992.1 |
| length | 784 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | LOC117599589 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 16618712 ~ 16619718 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU335948 | lncRNA | downstream | 168946 | 16448439 ~ 16449766 (-) | True | G283546 |
| TU335946 | lncRNA | downstream | 168946 | 16449017 ~ 16449766 (-) | False | G283546 |
| TU335947 | lncRNA | downstream | 169937 | 16448439 ~ 16448775 (-) | False | G283546 |
| TU335937 | lncRNA | downstream | 216764 | 16400921 ~ 16401948 (-) | False | alg12 |
| XR_003403336.2 | lncRNA | downstream | 322522 | 16294880 ~ 16296190 (-) | True | LOC113532372 |
| TU336181 | lncRNA | upstream | 218817 | 16838535 ~ 16849762 (-) | False | LOC113532230 |
| TU336452 | lncRNA | upstream | 421909 | 17041627 ~ 17043280 (-) | True | G284003 |
| TU336615 | lncRNA | upstream | 887158 | 17506876 ~ 17507145 (-) | True | G284131 |
| TU336618 | lncRNA | upstream | 893892 | 17513610 ~ 17515240 (-) | True | G284134 |
| TU336619 | lncRNA | upstream | 901708 | 17521426 ~ 17523643 (-) | True | G284135 |
| XM_026922749.2 | mRNA | downstream | 37276 | 16568695 ~ 16581436 (-) | True | il17rel |
| XM_026922599.2 | mRNA | downstream | 165773 | 16449786 ~ 16452939 (-) | True | LOC113531729 |
| XM_034313344.1 | mRNA | downstream | 211849 | 16401207 ~ 16406863 (-) | True | alg12 |
| XM_034313343.1 | mRNA | downstream | 229231 | 16369669 ~ 16389481 (-) | True | brd1a |
| XM_034313186.1 | mRNA | downstream | 839768 | 15756306 ~ 15778944 (-) | False | cerk |
| XM_026922863.2 | mRNA | upstream | 2385 | 16622103 ~ 16647682 (-) | False | LOC113531895 |
| XM_026922862.2 | mRNA | upstream | 2385 | 16622103 ~ 16647682 (-) | False | LOC113531895 |
| XM_026922861.2 | mRNA | upstream | 2385 | 16622103 ~ 16647682 (-) | True | LOC113531895 |
| XM_026922864.2 | mRNA | upstream | 2385 | 16622103 ~ 16645227 (-) | False | LOC113531895 |
| XM_026922866.2 | mRNA | upstream | 2385 | 16622103 ~ 16634931 (-) | False | LOC113531895 |
| TU335292 | other | downstream | 1441099 | 15174348 ~ 15177613 (-) | False | LOC113531972 |
| XR_003403346.2 | other | downstream | 4037649 | 12580923 ~ 12581063 (-) | True | LOC113532438 |
| TU333129 | other | downstream | 4958385 | 11657890 ~ 11660327 (-) | True | G281092 |
| TU333108 | other | downstream | 5030688 | 11586304 ~ 11588024 (-) | True | G281074 |
| TU332827 | other | downstream | 5359320 | 11238935 ~ 11259392 (-) | True | vegfab |
| TU336422 | other | upstream | 338806 | 16958524 ~ 16964887 (-) | True | phf21b |
| trnar-ccg_5 | other | upstream | 483847 | 17103565 ~ 17103637 (-) | True | trnar-ccg_5 |
| TU337036 | other | upstream | 1359067 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
| TU337037 | other | upstream | 1359067 | 17978785 ~ 17980246 (-) | False | LOC113532261 |
| XR_004580005.1 | other | upstream | 1451029 | 18070747 ~ 18082361 (-) | False | tmem209 |
