RNA id: XR_004579996.1


Basic Information

Item Value
RNA id XR_004579996.1
length 1768
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id LOC117599592
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7530784 ~ 7534282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATATTTCACATCTTCAGAAATCCAGCAAAGGTTTAAAGAACTTCCAATCTCTCCTTCAAAACTTTAACAGACCATGGACTTCTGAGCAGacagcaacattgttattatttctgACAATGAGATTCCTGGAACGTCCACACAAGGCCTTTGAATCCAAGATCATTGGGACATAACCATTCTATCCAAAGACCCATAGCCGCTGTAGCACCACAGCCTAGAACAATCTTGCAAACTACACAAGTTGGGGACAGCCCGACTATCAGTGATGATGAATCAAGTGCTTCAGATGTGAGCGATGCCGATGATGATGGTAAtatggaagaagaagaggaggacattcaagaagaagaaaataaagtcAGAGAAGTCGATAACGAACTAGAGGAGATCAGCACCGCATTGAATGAATTCTTCCAACCAAAGACTGCTTTATTGGAAATCTTGGACATCTTGATGATACAGTTCAAAACCGTCCAGTAGATTTAACCTTTATTGGTGTGTCTGGACAAGTGGCCATAGTTGAACACTCAAAGAATCAACATTATTCCACATCCAGAGAGCAGATGAAGCCATCAACACCAcactccatctggccctcacccacctggacaaaaaggacacaTATATTTGAATGCTGTTAATAGACTTCAGTTCAACATTCTACACagtcattcctcagcacctgattggaaagctgaacctgctgggcctgaacacctccctctgcaactggatcctggacttcctgactgggagacctcagtcagttcagatcgggaacagcatcaaCAACACCACCACTCTGACCACTGgggccccccagggctgtgCGCTCAGTCCACTggtgttcactctgctgactcacgactgtgtagcaatgcacagctcgagcCACATCATCAAGTGcaccgatgacacgaccgtggtgggtctcatcaccAAGAACGATGAGTCAACATACAGAAAGGAAGTGCAgcagctaacggactggtgcagagctccattggggtctctcttccttccatcacagacatttacaccagactctgcatctgcaaagccaccagcattgtggctgaccccacgcacccctcacacaaaaTCTTCACCCTCCTACCATCTGGCAAAAGGCACCCAAGCATTTGGGCCCTCACGGACAGACTGTGTAACACAAAATGTGTGCTCATATTTGATAATGTTTAATCCTCAATGTTACAGAGGTATGGAACCCATATAGTGCAAAAGTACCCAGTATCTCAGTAAAAGGCTTGCTGACAGGAACTGTGTGCATGGGACACTGAGGCCCAAAAGTGACCTATATGACcttgtgttttctgtgtaaGGTGGGAAAGGAGGAacaagctgttcctttaagtgaGTTAGGCTTCCTTAAACAATAAGATAAGCATATGGGGTAATATGGAAACAAGATACATGGGAATATTGTGTCTTATTAAAAACAGGatgtagaaatattttcatgtaaatgtatatacgAATGCACAAAACACCCCTGCTCTCTAGAGTGATCTTTGCACCTTTGGTTAATCTTCGTTCATTGCTACAacagccatcagactcctcaatactcagagactggactgacaacagACATATACTCATACTCAACTGAACTCCATCCCACTCTCTTTGCAAttgtttgcacatttctgtatttactacctacattttgttttgttttattaaacagtgTATAAATTCTTGTCATTACTGTACTCTCTACCTGGGTGCTACCCTAaaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329920 lncRNA downstream 34521 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 104869 7424842 ~ 7425915 (-) False camk1da
XR_004579863.1 lncRNA downstream 114713 7414348 ~ 7416071 (-) True LOC117599447
TU329874 lncRNA downstream 301344 7229005 ~ 7229440 (-) True G278275
TU329864 lncRNA downstream 456199 7071746 ~ 7074585 (-) True G278265
TU330151 lncRNA upstream 262554 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 432538 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 682732 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 704693 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 855217 8389498 ~ 8390559 (-) True G278963
XM_034313286.1 mRNA downstream 2841 7510088 ~ 7527943 (-) False LOC113531701
XM_026922562.2 mRNA downstream 2841 7510176 ~ 7527943 (-) True LOC113531701
XM_034313285.1 mRNA downstream 2859 7510176 ~ 7527925 (-) False LOC113531701
XM_026922817.2 mRNA downstream 30705 7421988 ~ 7500079 (-) True camk1da
XM_026923502.2 mRNA downstream 127277 7391215 ~ 7403507 (-) True optn
XM_026923324.2 mRNA upstream 5643 7539924 ~ 7560116 (-) True ttll12
XM_034313356.1 mRNA upstream 25868 7560149 ~ 7592040 (-) True pnpla3
XM_034313355.1 mRNA upstream 26921 7561202 ~ 7592039 (-) False pnpla3
XM_034313354.1 mRNA upstream 26962 7561243 ~ 7578390 (-) False pnpla3
XM_026923325.2 mRNA upstream 27088 7561369 ~ 7578390 (-) False pnpla3
trnam-cau_46 other downstream 1427637 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1497591 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1538850 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1546220 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2558539 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 59446 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 518807 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 684280 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1274939 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1673070 9207351 ~ 9208563 (-) True G279415