RNA id: trnaa-ugc_10


Basic Information

Item Value
RNA id trnaa-ugc_10
length 72
RNA type tRNA
GC content 0.57
exon number 1
gene id trnaa-ugc_10
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18083238 ~ 18083309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggggATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGCCCCAGGTTCAATCCCCGGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337033 lncRNA downstream 53323 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 181971 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 185008 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 232344 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 292475 17790534 ~ 17790763 (-) True G284295
TU337055 lncRNA upstream 5345 18088654 ~ 18088942 (-) True G284520
TU337057 lncRNA upstream 8908 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 97070 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 263144 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 615612 18698921 ~ 18747804 (-) False LOC113532190
XM_034313388.1 mRNA downstream 877 18068598 ~ 18082361 (-) True tmem209
XM_026922878.2 mRNA downstream 15653 18028287 ~ 18067585 (-) False ahcyl2b
XM_026922877.2 mRNA downstream 15653 18028287 ~ 18067585 (-) True ahcyl2b
XM_026923721.2 mRNA downstream 59766 17990629 ~ 18023472 (-) True strip2
XM_034313059.1 mRNA upstream 14318 18097627 ~ 18106446 (-) False slc5a8
XM_026923816.2 mRNA upstream 14318 18097627 ~ 18106446 (-) False slc5a8
XM_026923815.2 mRNA upstream 14318 18097627 ~ 18106446 (-) True slc5a8
XM_026923382.2 mRNA upstream 54486 18137795 ~ 18141774 (-) True arl1
XM_026923367.2 mRNA upstream 62563 18145872 ~ 18156560 (-) True tnnt2e
XR_004580005.1 other downstream 877 18070747 ~ 18082361 (-) False tmem209
TU337036 other downstream 102992 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other downstream 102992 17978785 ~ 17980246 (-) False LOC113532261
trnar-ccg_5 other downstream 979601 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 1118351 16958524 ~ 16964887 (-) True phf21b
trnaa-ugc_11 other upstream 474 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_13 other upstream 7242 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_14 other upstream 9164 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_003403330.2 other upstream 73515 18156824 ~ 18187998 (-) True cald1a
trnae-cuc_38 other upstream 129013 18212322 ~ 18212393 (-) True trnae-cuc_38