RNA id: trnaa-ugc_13


Basic Information

Item Value
RNA id trnaa-ugc_13
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaa-ugc_13
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18090551 ~ 18090622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGCCCCGGGTTCAATCCCCGGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337055 lncRNA downstream 1609 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 60636 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 189284 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 192321 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 239657 17850457 ~ 17850894 (-) True G284323
TU337057 lncRNA upstream 1595 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 89757 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 255831 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 608299 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 729320 18819942 ~ 18823200 (-) True G284862
XM_034313388.1 mRNA downstream 8190 18068598 ~ 18082361 (-) True tmem209
XM_026922878.2 mRNA downstream 22966 18028287 ~ 18067585 (-) False ahcyl2b
XM_026922877.2 mRNA downstream 22966 18028287 ~ 18067585 (-) True ahcyl2b
XM_026923723.2 mRNA downstream 68811 17990629 ~ 18021740 (-) False strip2
XM_034313059.1 mRNA upstream 7005 18097627 ~ 18106446 (-) False slc5a8
XM_026923816.2 mRNA upstream 7005 18097627 ~ 18106446 (-) False slc5a8
XM_026923815.2 mRNA upstream 7005 18097627 ~ 18106446 (-) True slc5a8
XM_026923382.2 mRNA upstream 47173 18137795 ~ 18141774 (-) True arl1
XM_026923367.2 mRNA upstream 55250 18145872 ~ 18156560 (-) True tnnt2e
trnaa-ugc_11 other downstream 6697 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_10 other downstream 7242 18083238 ~ 18083309 (-) True trnaa-ugc_10
XR_004580005.1 other downstream 8190 18070747 ~ 18082361 (-) False tmem209
TU337036 other downstream 110305 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other downstream 110305 17978785 ~ 17980246 (-) False LOC113532261
trnaa-ugc_14 other upstream 1851 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_003403330.2 other upstream 66202 18156824 ~ 18187998 (-) True cald1a
trnae-cuc_38 other upstream 121700 18212322 ~ 18212393 (-) True trnae-cuc_38
TU338301 other upstream 2222445 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 2331779 20422401 ~ 20422472 (-) True trnaa-ugc_16