RNA id: LOC113540013


Basic Information

Item Value
RNA id LOC113540013
length 596
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC113540013
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23516930 ~ 23517670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTGTACTTCCTACATCTCaaatgtctgtatgtatatatatatcctgtTCTCTTCTCTTTGGTGACAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACAAAAGAGGAGGGCAAAAGAGTGTCTATCAGCTGCAACGTGACCGGATTATCCACAGATTATGTCCACTGGTACCAAAAGAAAGACAATGAAGCTCTCACAAGGATCCTATATGTTGAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGAGGGTACAGTCTGATAATTACGAGCTGAGGATAGGAAACCTGAAGAAAATTCACTCGGCAGTTTATTACTGCGCTGCCTGGGACAGCACCCACAGTGACAGTAAATattaacagtgtgtgtacaaAAACCCTGATGGTACACAACCACAACAGGAAATGATATgaagtgtgaaaatgtgaatacACACATGCCAAACTCTACAGGAATCTCAAAAATATTCCTGGGCATAAACCCCTTATCTTGTGAACAGTGTGTTTTTGACAGTTAGCTAGAAGCAGTACCTTTAGGTCTACCCTATAGGTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82581 lncRNA downstream 62709 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA downstream 62726 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA downstream 62726 23453340 ~ 23454204 (-) False LOC113540115
TU82494 lncRNA downstream 118967 23396664 ~ 23397963 (-) True G69551
TU82468 lncRNA downstream 185395 23331016 ~ 23331535 (-) False retreg1
TU82643 lncRNA upstream 76661 23594331 ~ 23594544 (-) True G69649
TU82692 lncRNA upstream 133381 23651051 ~ 23651866 (-) True G69691
TU82956 lncRNA upstream 404436 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 413663 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 620623 24138293 ~ 24138492 (-) True G70025
XM_034303623.1 mRNA downstream 11749 23466417 ~ 23505181 (-) False LOC113540113
XM_026936355.2 mRNA downstream 11749 23466417 ~ 23505181 (-) True LOC113540113
XM_034303848.1 mRNA downstream 53205 23446805 ~ 23463725 (-) True LOC113540011
XM_034303847.1 mRNA downstream 74187 23430300 ~ 23442743 (-) True LOC117597115
XM_034303846.1 mRNA downstream 98040 23409414 ~ 23418890 (-) True LOC113540008
XM_026936182.2 mRNA upstream 19758 23537428 ~ 23544732 (-) True LOC113540016
XM_026936998.2 mRNA upstream 29500 23547170 ~ 23583496 (-) True amph
XM_034304072.1 mRNA upstream 29500 23547170 ~ 23583495 (-) False amph
XM_026936999.2 mRNA upstream 29500 23547170 ~ 23583495 (-) False amph
XM_026936706.2 mRNA upstream 240714 23758384 ~ 23782113 (-) True fam49ba
LOC113540114 other downstream 571 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 1995 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 2891 23513456 ~ 23514039 (-) True LOC113540012
LOC117597075 other downstream 19909 23495957 ~ 23497021 (-) True LOC117597075
LOC117597074 other downstream 21033 23495035 ~ 23495897 (-) True LOC117597074
LOC117597117 other upstream 13568 23531238 ~ 23532016 (-) True LOC117597117
XR_003404116.1 other upstream 519048 24036718 ~ 24036854 (-) True LOC113540746
TU83344 other upstream 786704 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2856088 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2954410 26472080 ~ 26551030 (-) False G71596

Expression Profile