RNA id: LOC113540068


Basic Information

Item Value
RNA id LOC113540068
length 448
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC113540068
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31867082 ~ 31870008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattcatgtgtctgtggctttcactaggtgactccatggcagattcaatacagccactttcccctcgtgaagttgtagatgaaggtgttaatgttactctgtcctgcaaataCGAAACAAGTGATGCAAATCCTtacctgcagtggtacagacaatatccaaaatctaaacctgagttccttcttttCATCGATCCAAGTGGATTTAAAACTGACCCTCTTCCATCACGTCTGTTTCCTAAAGTTGATAATAATAaccgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgaagcccacagtgacaggaaatccaactgcactgtacaaaaactaacacagttttgttcttCTGAAGGGAGAGCAAATGCGAAGTTCAATAATTTACACCCCttcaaacctctctctctctctctctct

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88244 lncRNA downstream 81325 31736292 ~ 31785757 (-) True G74458
TU88242 lncRNA downstream 110778 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA downstream 110778 31753121 ~ 31756304 (-) False G74457
TU88271 lncRNA downstream 121620 31744351 ~ 31745462 (-) True G74479
TU88199 lncRNA downstream 216498 31567051 ~ 31650584 (-) True G74417
TU88356 lncRNA upstream 23843 31893851 ~ 31901557 (-) True G74553
XR_004578081.1 lncRNA upstream 38640 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA upstream 38640 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA upstream 38640 31908648 ~ 31909914 (-) True LOC117597178
XR_004577914.1 lncRNA upstream 241578 32111586 ~ 32112411 (-) True LOC113540655
XM_026935889.2 mRNA downstream 139530 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 322448 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 333824 31528370 ~ 31533258 (-) True psmb5
XM_026936968.2 mRNA downstream 364704 31379473 ~ 31502378 (-) False LOC113540461
XM_026936967.2 mRNA downstream 364704 31379473 ~ 31502378 (-) True LOC113540461
XM_034303863.1 mRNA upstream 953550 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 1102777 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1261079 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1261079 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1261079 33131087 ~ 33134319 (-) True c4h14orf119
TU87656 other downstream 1091263 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 1123256 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1844557 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 2136225 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 2291355 29564602 ~ 29575727 (-) False LOC113540665
LOC117597010 other upstream 510 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 1151 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 4301 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 10026 31880034 ~ 31880556 (-) True G74550
LOC117597011 other upstream 12935 31882943 ~ 31883607 (-) True LOC117597011

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01013737_00000561_00001177.mRNA True 479 mRNA 0.42 2 CI01013737 561 ~ 1212 (+)