RNA id: LOC113540133


Basic Information

Item Value
RNA id LOC113540133
length 738
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC113540133
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32815429 ~ 32816281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACAgcacaataataaactaaaacattACTATAATGTCTCCATCTGAGCTTTTGTGAGGTGTACTTATGGTATCTACTTCTTAGCCCCATTCCAATACAGCTTATGTATGAAGCCCATCTGCcagccaaatgaatgattttaatgtcctcaaattaacacaataatcTGATAGGCTACCTGTGCAGTATGAGAGGAAGCAGAgttgtgatgaataaatgaataaatatgagtgggtggagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGcagAGGCTGCAGACAACAGCATTGAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCTACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAATCCACAGAACGTGTCACTGAAGCTGAACCACCTCATCCACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577920.1 lncRNA downstream 46147 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 155468 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 163188 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 167331 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 187433 32627561 ~ 32627996 (-) True G74640
XR_004577919.1 lncRNA upstream 33646 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 45926 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 55465 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 129853 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 209140 33025421 ~ 33025846 (-) True G74717
XM_026935889.2 mRNA downstream 1087877 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1270795 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1282171 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1345788 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 7277 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 156504 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 314806 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 314806 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 314806 33131087 ~ 33134319 (-) True c4h14orf119
LOC117597139 other downstream 3694 32810432 ~ 32811735 (-) True LOC117597139
LOC117596923 other downstream 5133 32809596 ~ 32810296 (-) True LOC117596923
LOC117596938 other downstream 11207 32803554 ~ 32804222 (-) True LOC117596938
LOC117596927 other downstream 37631 32776966 ~ 32777798 (-) True LOC117596927
TU88466 other downstream 150009 32664898 ~ 32665420 (-) False LOC117596929
LOC117596924 other upstream 18758 32835039 ~ 32835722 (-) True LOC117596924
LOC117596934 other upstream 27820 32844101 ~ 32845270 (-) True LOC117596934
TU88527 other upstream 49665 32865946 ~ 32866461 (-) True G74703
TU88528 other upstream 49665 32865946 ~ 32868466 (-) False G74703
TU88533 other upstream 129900 32946181 ~ 32946800 (-) False LOC117597171

Expression Profile