RNA id: LOC117595679


Basic Information

Item Value
RNA id LOC117595679
length 773
RNA type V_segment
GC content 0.39
exon number 2
gene id LOC117595679
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32125572 ~ 32126462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagctacatgtagagacatcagagacaatctcaaatacacaacactggcatttatttctaaagctaGAGGTCTGAACTAAACACTCAGGATAACAATGTTACTcctcttcttgcttttcttcactATTGCTGATATCGAGGCTGCAGACAACAGCATTAAACCAGAaaaaccctccagatctgtaaCTGAAGGCAGCAACATCACACTGTCCTGCACATATACTGGATCAGTTTACAGTCTCCACTGGTATCAACAAAAACCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGATGAATCCACAGAACGTGTCACTAAAGCTAAACCACCTCATACACGATTGTCTATTAAACTTGATAAAATGGGAAAgaaagtggatctgctcatctcctctgctgcagtGACAGACTCTGCACTGTACTACTGCGCTCTGaggcccacagtgacaggaaacacaactacactgtacaaaaagCACTACACATGACTGGAGCACAGCCATGCTTTTCTCACAAGATGGAGctatttacatctttacattCACTTCTTCAGCTCTCTGTCTAtgatgttcatttgttttaaagGTTTACAATCACATTTGCACCGACTACAAGTTGTGGTAACAGTATATTTTAAGAAAGACAATATTGGCATTAAGTAAAGTCTTATTATCTGTCCATTAAAACCCAAATTACCCATTTCACTATAAAATTATTCTTTATCCATAAAGATATGTATTGCTTCATAATTGGGGCTCAGTGATAATTACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577914.1 lncRNA downstream 13161 32111586 ~ 32112411 (-) True LOC113540655
XR_004578081.1 lncRNA downstream 215658 31908648 ~ 31909914 (-) False LOC117597178
XR_004578080.1 lncRNA downstream 215658 31908648 ~ 31909914 (-) False LOC117597178
XR_004578079.1 lncRNA downstream 215658 31908648 ~ 31909914 (-) True LOC117597178
TU88356 lncRNA downstream 224015 31893851 ~ 31901557 (-) True G74553
TU88436 lncRNA upstream 37592 32164054 ~ 32164414 (-) True G74619
TU88439 lncRNA upstream 73903 32200365 ~ 32200804 (-) True G74622
XR_004577913.1 lncRNA upstream 75619 32202081 ~ 32202854 (-) True LOC117596963
TU88457 lncRNA upstream 501099 32627561 ~ 32627996 (-) True G74640
XR_004577912.1 lncRNA upstream 520819 32647281 ~ 32648098 (-) True LOC117596962
XM_026935889.2 mRNA downstream 398020 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 580938 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 592314 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 655931 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 697096 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 846323 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 1004625 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 1004625 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 1004625 33131087 ~ 33134319 (-) True c4h14orf119
TU88425 other downstream 12117 32074383 ~ 32113455 (-) True LOC117596957
LOC117596957 other downstream 50684 32074388 ~ 32074888 (-) False LOC117596957
TU88423 other downstream 58235 32066812 ~ 32067337 (-) True G74607
LOC117597180 other downstream 193509 31931305 ~ 31932063 (-) True LOC117597180
LOC117597121 other downstream 214598 31905626 ~ 31910974 (-) True LOC117597121
TU88430 other upstream 5489 32131951 ~ 32132467 (-) True LOC117596961
LOC117596961 other upstream 5499 32131961 ~ 32132436 (-) False LOC117596961
LOC117596956 other upstream 17997 32144459 ~ 32144943 (-) True LOC117596956
TU88432 other upstream 22733 32149195 ~ 32149797 (-) True G74615
LOC113540132 other upstream 42120 32168582 ~ 32169236 (-) True LOC113540132

Expression Profile