RNA id: LOC117596923


Basic Information

Item Value
RNA id LOC117596923
length 553
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC117596923
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32809596 ~ 32810296 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCACAACAATCATGTTactcttctttgttttcataGCTGTTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTTTTATATCTACAGAGCGTGTCAGTAAAGCTGAACAACTTGACCCAAGACTATCCATCAGACTGCGTAAAAATGAGAGGAAAGTAGATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATggagcccacagtgacaggaaacacaactacactgtacaaaaactccttcacatcacaaaagggaggtttttctttttctcaggagGGGGAGCTGTTTGGCTTTTTGATTCAAATAAATTTTCCTTTTCCAATTTCCAGTCTTTGATGTTGGAATAACTTTGAATATCTATGCTGATTGTGCTAGAATAATCTCCATAGAAA

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05412 Arrhythmogenic right ventricular cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577920.1 lncRNA downstream 40314 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 149635 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 157355 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 161498 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 181600 32627561 ~ 32627996 (-) True G74640
XR_004577919.1 lncRNA upstream 39631 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 51911 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 61450 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 135838 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 215125 33025421 ~ 33025846 (-) True G74717
XM_026935889.2 mRNA downstream 1082044 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1264962 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1276338 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1339955 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 13262 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 162489 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 320791 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 320791 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 320791 33131087 ~ 33134319 (-) True c4h14orf119
LOC117596938 other downstream 5374 32803554 ~ 32804222 (-) True LOC117596938
LOC117596927 other downstream 31798 32776966 ~ 32777798 (-) True LOC117596927
TU88466 other downstream 144176 32664898 ~ 32665420 (-) False LOC117596929
TU88467 other downstream 147120 32661983 ~ 32662476 (-) False LOC117596929
LOC117596929 other downstream 147129 32661892 ~ 32662467 (-) True LOC117596929
LOC117597139 other upstream 136 32810432 ~ 32811735 (-) True LOC117597139
LOC113540133 other upstream 5133 32815429 ~ 32816281 (-) True LOC113540133
LOC117596924 other upstream 24743 32835039 ~ 32835722 (-) True LOC117596924
LOC117596934 other upstream 33805 32844101 ~ 32845270 (-) True LOC117596934
TU88527 other upstream 55650 32865946 ~ 32866461 (-) True G74703

Expression Profile