RNA id: LOC117596924


Basic Information

Item Value
RNA id LOC117596924
length 537
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC117596924
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32835039 ~ 32835722 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATACTGCCGTTTATATCTACTGCAAGAGAGACACTCACAACAATCATGTTcctcttctttgttttcataGCTGCTAAAAACATTGCAGGTGCTGTTGACAGCAGCATTACACCAGACCAACCCGTCATATCTTCAAGTGAAGGCAGCAGCaccacactgacctgcacataTGATCAATCAGCTGACTATCTCTACTGGTATCGACAAAACCCTCAATCAGGACCAGAGTTTCTGCTGAGGATTATTATATCTACAGAGCGTGTCAGTAAAGCTGAACAACTTGACCCAAGACTATCTATCAGACTCcgtaaaaatgaaaagaaagtagATCTGGAGATCTTTCCTGCTGCAGTATCAGACTCTTCACTGTACTACTGCGCCATGCAGCCCACAGtaacaggaaacacaactacactgtacaaaaactccTTCACATCACAAAAGGgaggttttctttttctctcaggaGGGGAGCTGTTTGGCTTTTGATTCAAATAAATTTTCCTTTTCCAATTTCCAGTCTTTGATGTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577920.1 lncRNA downstream 65757 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 175078 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 182798 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 186941 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 207043 32627561 ~ 32627996 (-) True G74640
XR_004577919.1 lncRNA upstream 14205 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 26485 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 36024 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 110412 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 189699 33025421 ~ 33025846 (-) True G74717
XM_034303863.1 mRNA downstream 9472 32823558 ~ 32825567 (-) True LOC117597140
XM_026935889.2 mRNA downstream 1107487 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1290405 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1301781 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1365398 31379473 ~ 31469641 (-) False LOC113540461
XM_034303864.1 mRNA upstream 137063 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 295365 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 295365 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 295365 33131087 ~ 33134319 (-) True c4h14orf119
XM_026912175.2 mRNA upstream 330220 33165942 ~ 33168027 (-) False cbln12
LOC113540133 other downstream 18758 32815429 ~ 32816281 (-) True LOC113540133
LOC117597139 other downstream 23304 32810432 ~ 32811735 (-) True LOC117597139
LOC117596923 other downstream 24743 32809596 ~ 32810296 (-) True LOC117596923
LOC117596938 other downstream 30817 32803554 ~ 32804222 (-) True LOC117596938
LOC117596927 other downstream 57241 32776966 ~ 32777798 (-) True LOC117596927
LOC117596934 other upstream 8379 32844101 ~ 32845270 (-) True LOC117596934
TU88527 other upstream 30224 32865946 ~ 32866461 (-) True G74703
TU88528 other upstream 30224 32865946 ~ 32868466 (-) False G74703
TU88533 other upstream 110459 32946181 ~ 32946800 (-) False LOC117597171
LOC117597170 other upstream 114112 32949834 ~ 32950494 (-) True LOC117597170

Expression Profile