RNA id: LOC117596927


Basic Information

Item Value
RNA id LOC117596927
length 685
RNA type V_segment
GC content 0.39
exon number 2
gene id LOC117596927
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 32776966 ~ 32777798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttcactgttatattcatgtgtctgtggctttcactaggtgactccatggcagatccAATAGAGCCACTTGTTACTTCTAAAGTTGGAGATCAAGGTGATGaagttactctgtcctgcagctACAAAAAATTCAGTGGTACCGTAAACaacctgcagtggtacagacaatatccaaaatctaaacctgagttccttctttatatttttgaaagtgGAACTCTGAGTCCCAACCCTcccccaagaatgtctgctaaagttcatggagataaacgagtggatctgctcatctcctctgctgctgtatcagactctgcactatactactgtgctctgcagcccacagtgacaggaaatccaactgcactgtacaaaaactacacttttattatacagtgttgaGCCTCATCAGCAGAATAAAGagtctacacacagagagaaggtcggatttgtttaaagtgagaatgtgaaataatgatttaacatttcagttttcttcctttcattttataaagtatatttcTGATGCTCATTTGGCAGCTTATTCTCCTCTCAGCACAGTTCCTCCTGATTTTAGTCTGgtccttacttaattctgacatcatcatctctatcaTAGTATTCTGAAATTACATTCAAGCGTTCTGAAAGCGTCAAACATTATCTTAGGAGATCTTTTGTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577920.1 lncRNA downstream 7684 32767588 ~ 32769282 (-) True LOC117596968
TU88464 lncRNA downstream 117005 32659532 ~ 32659961 (-) True G74647
TU88463 lncRNA downstream 124725 32651787 ~ 32652241 (-) True G74646
XR_004577912.1 lncRNA downstream 128868 32647281 ~ 32648098 (-) True LOC117596962
TU88457 lncRNA downstream 148970 32627561 ~ 32627996 (-) True G74640
XR_004577919.1 lncRNA upstream 72129 32849927 ~ 32851375 (-) True LOC117596967
TU88526 lncRNA upstream 84409 32862207 ~ 32862659 (-) True G74702
XR_004577918.1 lncRNA upstream 93948 32871746 ~ 32873023 (-) True LOC117596966
XR_004578073.1 lncRNA upstream 168336 32946134 ~ 32947158 (-) True LOC117597171
TU88542 lncRNA upstream 247623 33025421 ~ 33025846 (-) True G74717
XM_026935889.2 mRNA downstream 1049414 31710064 ~ 31727552 (-) True nmnat2
XM_034303857.1 mRNA downstream 1232332 31538539 ~ 31544634 (-) True LOC113540064
XM_026936953.2 mRNA downstream 1243708 31528370 ~ 31533258 (-) True psmb5
XM_034304039.1 mRNA downstream 1307325 31379473 ~ 31469641 (-) False LOC113540461
XM_034303863.1 mRNA upstream 45760 32823558 ~ 32825567 (-) True LOC117597140
XM_034303864.1 mRNA upstream 194987 32972785 ~ 32977700 (-) True LOC117597141
XM_026912180.2 mRNA upstream 353289 33131087 ~ 33135775 (-) False c4h14orf119
XM_026912181.2 mRNA upstream 353289 33131087 ~ 33135467 (-) False c4h14orf119
XM_026912179.2 mRNA upstream 353289 33131087 ~ 33134319 (-) True c4h14orf119
TU88466 other downstream 111546 32664898 ~ 32665420 (-) False LOC117596929
TU88467 other downstream 114490 32661983 ~ 32662476 (-) False LOC117596929
LOC117596929 other downstream 114499 32661892 ~ 32662467 (-) True LOC117596929
LOC117597135 other downstream 118044 32658361 ~ 32658922 (-) True LOC117597135
TU88461 other downstream 132432 32644024 ~ 32644534 (-) True G74644
LOC117596938 other upstream 25756 32803554 ~ 32804222 (-) True LOC117596938
LOC117596923 other upstream 31798 32809596 ~ 32810296 (-) True LOC117596923
LOC117597139 other upstream 32634 32810432 ~ 32811735 (-) True LOC117597139
LOC113540133 other upstream 37631 32815429 ~ 32816281 (-) True LOC113540133
LOC117596924 other upstream 57241 32835039 ~ 32835722 (-) True LOC117596924

Expression Profile